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CTATACACCATCACAACTGTTATTCTCACTGGACAGACAGTATACTATAGCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcatcagatgtggcatattattatgttctcatctgcttctacatggatattttaacatgcgatgcattgccacttcaaccatcatatgcaaatt...
species | Oryza sativa |
transcript | LOC_Os01g16170.4 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29677835|gb|CB674110.1|CB674110
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29639705|gb|CB644714.1|CB644714
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29679456|gb|CB675731.1|CB675731
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29630352|gb|CB635361.1|CB635361
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29629095|gb|CB634106.1|CB634106
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29616200|gb|CB621212.1|CB621212
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29672767|gb|CB669042.1|CB669042
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29677585|gb|CB673860.1|CB673860
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|58587497|gb|CF985805.1|CF985805
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGEST: gi|29681319|gb|CB677594.1|CB677594
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29624849|gb|CB629860.1|CB629860
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29663859|gb|CB660134.1|CB660134
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAAAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29641024|gb|CB646031.1|CB646031
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29678251|gb|CB674526.1|CB674526
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGEST: gi|29664792|gb|CB661067.1|CB661067
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATACACCATCACAACTGTTATTCTCACTGGACAGACAGTATACTATAGCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcatcagatgtggcatattattatgttctcatctgcttctacatggatattttaacatgcgatgcattgccacttcaaccatcatatgcaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG