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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTGCTCTTTCCAGTTGCGTTGTGCCATGCTCTTGGTCATGTCACTAGCAATGTATCGTTTGCTACTGTTGCAGTTTCATTTGCCCACACCATTAAAGgtgccattttttgtgcatatttaattcttgaatttcgaccttcttttgttttatatgctaatgtttttgtgttgcccaattgcaatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g13770.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g13770.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G070605_T01 (Zea mays), 5'ss of exon 5
AAGCTGCTCTTTCCAGTTGCGTTGTGCCATGCTCTTGGTCATGTCACTAGCAATGTATCGTTTGCTACTGTTGCAGTTTCATTTGCCCACACCATTAAAGgtgccattttttgtgcatatttaattcttgaatttcgaccttcttttgttttatatgctaatgtttttgtgttgcccaattgcaatgcag
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AAGCTTCTCTTTCCAGTCGCCCTGTGCCATGGTATTGGTCACATCACTAGCAATGTGTCCTTCGCTGCTGTTGCAGTCTCATTTGCCCACACTATCAAAGgtgattttttttcttttcttccaatttttta-tttcgatgtggattcttctt----gcccatgttcttatgtcacatacttgcgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29616222|gb|CB621234.1|CB621234
EST:     CAATGTATCGTTTGCTACTGTTGCAGTTTCATTTGCCCACACCATTAAAG                         CTCTGGAGCCCTTCTTCAATGCAGCGGCTACCCAGTTTGTCCTTGGACAGC
genomic: CAATGTATCGTTTGCTACTGTTGCAGTTTCATTTGCCCACACCATTAAAGgtgccatttt ... tgcaatgcagCTCTGGAGCCCTTCTTCAATGCAGCGGCTACCCAGTTTGTCCTTGGACAGC
EST: gi|66928470|gb|CX115318.1|CX115318
EST:     CAATGTATCGTTTGCTACTGTTGCAGTTTCATTTGCCCACACCATTAAAG                         CTCTGGAGCCCTTCTTCAATGCAGCGGCTACCCAGTTTGTCCTTGGACAGC
genomic: CAATGTATCGTTTGCTACTGTTGCAGTTTCATTTGCCCACACCATTAAAGgtgccatttt ... tgcaatgcagCTCTGGAGCCCTTCTTCAATGCAGCGGCTACCCAGTTTGTCCTTGGACAGC
EST: gi|29661884|gb|CB658159.1|CB658159
EST:     CAATGTATCGTTTGCTACTGTTGCAGTTTCATTTGCCCACACCATTAAAG                         CTCTGGAGCCCTTCTTCAATGCAGCGGCTACCCAGTTTGTCCTTGGACAGC
genomic: CAATGTATCGTTTGCTACTGTTGCAGTTTCATTTGCCCACACCATTAAAGgtgccatttt ... tgcaatgcagCTCTGGAGCCCTTCTTCAATGCAGCGGCTACCCAGTTTGTCCTTGGACAGC
EST: gi|29657881|gb|CB654156.1|CB654156
EST:     CAATGTATCGTTTGCTACTGTTGCAGTTTCATTTGCCCACACCATTAAAG                         CTCTGGAGCCCTTCTTCAATGCAGCGGCTACCCAGTTTGTCCTTGGACAGC
genomic: CAATGTATCGTTTGCTACTGTTGCAGTTTCATTTGCCCACACCATTAAAGgtgccatttt ... tgcaatgcagCTCTGGAGCCCTTCTTCAATGCAGCGGCTACCCAGTTTGTCCTTGGACAGC