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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACCATTTACTGCAGCACCAATACAATTTGATGAAATATCCAGCACCTCCAAATGTTCCATTGGCTCCTATGCAAAACGGAATGCATCCTATGCCAGgtaaagtccatgcttacaagtctaggcctggaaagttgttactctgtctagtagatttcagtctaaagtttcaaatattctgtttatattgctttcgtgt...

Basic information

species Oryza sativa
transcript LOC_Os01g12080.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g12080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM5G816784_T02 (Zea mays), 5'ss of exon 5
TTCAACCATTTACTGCAGCACCAATACAATTTGATGAAATATCCAGCACCTCCAAATGTTCCATTGGCTCCTATGCAAAACGGAATGCATCCTATGCCAGgtaaagtccatgcttacaagtctaggcctggaaagttgttactctgtctagtagatttcagtctaaagtttcaaatattctgtttatattgctttcg-tgt---
||||| |||||| |||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| || ||||| ||||| |||| |||||||||||| |||| || ||| |||||||  | ||||||| |||  ||  || || |||  |||  | ||   |||  | | || |||||   ||  ||| | |||   
TTCAATCATTTATTGCAACACCAGTACAATTTGATGAAATATCCAGCACCTCCGAATATTCCATTGGCTCCAATACAAAATGGAATTCATCATATGCCAGgtaatgtccctgtttataagtctat-cttggaaagatgt--ctaagt-taataggcttctatttaggatttgcatttttatgttttccttagttttgatgtact

upper sequence: LOC_Os01g12080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G154221_T01 (Zea mays), 5'ss of exon 5
TTCAACCATTTACTGCAGCACCAATACAATTTGATGAAATATCCAGCACCTCCAAATGTTCCATTGGCTCCTATGCAAAACGGAATGCATCCTATGCCAGgtaaagtccatgcttacaagtctaggcctggaaagttgttactctgtctagtagatttcagtctaaagttt-----caaatattctgtttatat-tgctttcgtgt
||||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||| |||||||||||| |  | || ||| ||||||   |||| |||| ||   ||   | || |||  |||  | ||  ||||      |||||||  |   |||  |   |||    
TTCAATCATTTATTGCAACACCAGTACAATTTGATGAAATATCCAGCACCTCCAAATGTTCCATTGGCTCCAATACAAAATGGAATTCATCATATGCCAGgtaatgctcctgtttataagtcttt-cctgtaaagatg--gctaaat-taataggcttctatttagggtttgtatctaaatattgcggaaatacgtatgttcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688061|gb|CK076748.1|CK076748
EST:     TCCAAATGTTCCATTGGCTCCTATGCAAAACGGAATGCATCCTATGCCAG                         TTAATAATTTGCCTATGGGATATCCGGTACTTCAGCAACCTATGATGCCTG
genomic: TCCAAATGTTCCATTGGCTCCTATGCAAAACGGAATGCATCCTATGCCAGgtaaagtcca ... tccagtgcagTTAATAATTTGCCTATGGGATATCCGGTACTTCAGCAACCTATGATGCCTG
EST: gi|58590445|gb|CF988753.1|CF988753
EST:     TCCAAATGTTCCATTGGCTCCTATGCAAAACGGAATGCATCCTATGCCAG                         TTAATAATTTGGCTATGGGATATCCG
genomic: TCCAAATGTTCCATTGGCTCCTATGCAAAACGGAATGCATCCTATGCCAGgtaaagtcca ... tccagtgcagTTAATAATTTGCCTATGGGATATCCG