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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATATACCTTGTATGGGAAACCAACCATTACAGAGATGTTGAGAGGACTTACATTCCAGATATCTGCCAACTCCTTTTTCCAGACTAATACAAAACAGgtttgttaatgctctgttaggttcgaagtattgacatatctatgtcatgtgacttacattccagttcatgtatcagttatttccacgttatgctaaaattttggtgtctagtgcttgagcatttccaacagtttttcctgcatggttgcatgtactgcag

Basic information

species Oryza sativa
transcript LOC_Os01g09750.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g09750.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G115198_T02 (Zea mays), 5'ss of exon 5
AGAATATACCTTGTATGGGAAACCAACCATTACAGAGATGTTGAGAGGACTTACATTCCAGATATCTGCCAACTCCTTTTTCCAGACTAATACAAAACAGgtttgttaatgctctgtta-ggttcgaagtattgacatatctatgtcatgtgacttacattccagttcat-gtatcagttatttccacgttatgctaaaattttggtgtctagtgcttgagcatttccaacagtttttcctgcatggttgcatgtactgcag
||||||||| ||||| ||||| |||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||  || |   | | |  | ||  | ||     || | |||  ||     | ||  |   | |||  |     || | ||||  |    | |  ||  ||                                                         
AGAATATACTTTGTACGGGAAGCCAAACATTACAGAAATGTTGAGAGGACTTGCGTTCCAGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAGgtttgtttttgttgaatgatgaatggagattttattgcatttttgttttgaccactgcaccct--tccatcatggtgtttctctccaactc---caatcatcctg---------------------------------------------------------

upper sequence: LOC_Os01g09750.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA13G42890.1 (Glycine max), 5'ss of exon 6
AGAATATACCTTGTATGGGAAACCAACCATTACAGAGATGTTGAGAGGACTTACATTCCAGATATCTGCCAACTCCTTTTTCCAGACTAATACAAAACAGgtttgttaatgctctgttaggttcgaagtattgacatatctatgtcatgtgacttacattccagttcatgtatcagttatttccacgttatgctaaaattttggtgtctagtgcttgagcatttccaacagtttttcctgcatggttgcatgtactgcag
|||||| || |||||||||||| | | |||||||||||  || ||||| ||||||||||| ||||| |||||||| || || || || |||||  | ||||||||  |     |    |  || |   |  |       |  ||||   |   |||  |   |  |   ||    || |  |   |   |    |||   ||  | | |     || ||                                         
AGAATACACTTTGTATGGGAAATCTAGCATTACAGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGgtttgcaatgagcccaaaaattttggcattctctttagaccctgtcccatattttatttcttaaatttagtcatggtcacctgt-caagaaaaaaaatcatttttattttcccttttag-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27548300|gb|CA766414.2|CA766414
EST:     TTACATTCCAGATATCTGCCAACTCCTTTTTCCAGACTAATACAAAACAG                         GCTGATGTTCTGTACAAGCTTATTGGGGAATCTGCTGGGCTTAAGGGAGAT
genomic: TTACATTCCAGATATCTGCCAACTCCTTTTTCCAGACTAATACAAAACAGgtttgttaat ... tgtactgcagGCTGATGTTCTGTACAAGCTTATTGGGGAATCTGCTGGGCTTAAGGGAGAT