1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CACCGGCAAAATAGTTGACAGTATTAAGGATCGCGGTATTAACCAGGTGTATATTATTGGAGGTGATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAGgtaactcacaggctgataatgatgtaaataaatgtttgtgggatgcccaatgctatctataacacaaacttgttgaaaatgatttcag
species | Oryza sativa |
transcript | LOC_Os01g09570.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATATTATTGGAGGTGATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAG GAAGTTCGGAGGCGAGGCCTCAAATGTTCTGTGGTTGGTGTCCCAAAGACCEST: gi|29670643|gb|CB666918.1|CB666918
genomic: ATATTATTGGAGGTGATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAGgtaactcaca ... atgatttcagGAAGTTCGGAGGCGAGGCCTCAAATGTTCTGTGGTTGGTGTCCCAAAGACC
EST: ATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAG GAAGTTCGGAGGCGAGGCCTCAAATGTTCTGTGGTTGGTGTCCCAAAGACCEST: gi|33797180|gb|CF324454.1|CF324454
genomic: ATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAGgtaactcaca ... atgatttcagGAAGTTCGGAGGCGAGGCCTCAAATGTTCTGTGGTTGGTGTCCCAAAGACC
EST: ATATTATTGGAGGTGATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAG GAAGTTCGGAGGCGAGGCCTCAAATGTTCTGEST: gi|33675777|gb|CF304016.1|CF304016
genomic: ATATTATTGGAGGTGATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAGgtaactcaca ... atgatttcagGAAGTTCGGAGGCGAGGCCTCAAATGTTCTG
EST: ATATTATTGGAGGTGATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAG GAAGTTCGGAGGCGAGGCCTCAAATGTTCTGTGGTTGGTGTCCCAAAGACCEST: gi|33674975|gb|CF303214.1|CF303214
genomic: ATATTATTGGAGGTGATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAGgtaactcaca ... atgatttcagGAAGTTCGGAGGCGAGGCCTCAAATGTTCTGTGGTTGGTGTCCCAAAGACC
EST: ATATTATTGGAGGTGATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAG GAAGTTCGGAGGCGAGGCCTCAAATGTTCTGTGGTTGGTGTCCCAAAGACC
genomic: ATATTATTGGAGGTGATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAGgtaactcaca ... atgatttcagGAAGTTCGGAGGCGAGGCCTCAAATGTTCTGTGGTTGGTGTCCCAAAGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCGGCAAAATAGTTGACAGTATTAAGGATCGCGGTATTAACCAGGTGTATATTATTGGAGGTGATGGTACCCAGAAAGGTGCTTCCGTAATTTATGAGgtaactcacaggctgataatgatgtaaataaatgtttgtgggatgcccaatgctatctataacacaaacttgttgaaaatgatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG