1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgatccagtgatcaatacatgttccacaaacaattgaagaaagagtttgacatatttttctcatatttccag
species | Oryza sativa |
transcript | LOC_Os01g08700.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATGAAGTATTAG CAACTTTTGTTCTTCATCATCNTGAGCATGGCCATGCAGTTGTGCATCCGAEST: gi|29642016|gb|CB647023.1|CB647023
genomic: GATGAAGTATTAGgtaatttgat ... atatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
EST: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAG CAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGAEST: gi|29636922|gb|CB641931.1|CB641931
genomic: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgat ... atatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
EST: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAG CAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGAEST: gi|88369882|gb|CI680559.1|CI680559
genomic: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgat ... atatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
EST: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAG CAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGAEST: gi|29646260|gb|CB651267.1|CB651267
genomic: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgat ... atatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
EST: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCNTTGTAGATGAAGTATTAG CAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGAEST: gi|29636923|gb|CB641932.1|CB641932
genomic: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgat ... atatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
EST: ATCCATCAAAAGAAAAGCGCCTGGTAGATGAAGTATTAG CAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGAEST: gi|88587781|gb|CI705554.1|CI705554
genomic: ATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgat ... atatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
EST: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAG CAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGAEST: gi|88361618|gb|CI680183.1|CI680183
genomic: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgat ... atatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
EST: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAG CAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGAEST: gi|88369175|gb|CI680281.1|CI680281
genomic: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgat ... atatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
EST: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAG CAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGAEST: gi|58590243|gb|CF988551.1|CF988551
genomic: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgat ... atatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
EST: CAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAG CAGCGGTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGAEST: gi|88454127|gb|CI694894.1|CI694894
genomic: CAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgat ... atatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
EST: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAG CAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
genomic: TCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgat ... atatttccagCAACTTTTGTTCTTCATCATCCTGAGCATGGCCATGCAGTTGTGCATCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAGgtaatttgatccagtgatcaatacatgttccacaaacaattgaagaaagagtttgacatatttttctcatatttccag
- - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - AAGAAA