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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGAAGCCAAAGCCCCTGCAGATGCTGCTGCCGATGGTGCTGAAAATGGCGCACCAAATTCTGAGGAAAAATCAGTCCCTATGGAAACTGATGCCAAGgtaaattttcattactgacaaaatcttgaattatcatgctagcaggtgcctgaagccttttaatttgaaaccttttgctttttgaagtatcatcagtaca...

Basic information

species Oryza sativa
transcript LOC_Os01g08560.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218481790|gb|FG945721.1|FG945721
EST:     GCGCACCAAATTCTGAGGAAAAATCAGTCCCTATGGAAACTGATGCCAAG                         GTTGAGCCATCAAAGAAGAAAGTAAAGAAAACTAATGTTCCAGTTGCTGAG
genomic: GCGCACCAAATTCTGAGGAAAAATCAGTCCCTATGGAAACTGATGCCAAGgtaaattttc ... aaaactgcagGTTGAGCCATCAAAGAAGAAAGTAAAGAAAACTAATGTTCCAGTTGCTGAG
EST: gi|58597595|gb|CK008123.1|CK008123
EST:     AACTGATGCCAAGG                         GTTGAGCCATCAAAGAAGAAAGTAAAGAAAACTAATGTTCCAGTTGCTGA
genomic: AACTGATGCCAA-Ggtaaattttc ... aaaactgcagGTTGAGCCATCAAAGAAGAAAGTAAAGAAAACTAATGTTCCAGTTGCTGA
EST: gi|29636673|gb|CB641682.1|CB641682
EST:     GCGCACCAAATTCTGAGGAAAAATCAGTCCCTATGGAAACTGATGCCAAG                         GTTGAGCCATCAAAGAAGAAAGTAAAGAAAACTAATGTTCCAGTTGCTGAG
genomic: GCGCACCAAATTCTGAGGAAAAATCAGTCCCTATGGAAACTGATGCCAAGgtaaattttc ... aaaactgcagGTTGAGCCATCAAAGAAGAAAGTAAAGAAAACTAATGTTCCAGTTGCTGAG
EST: gi|29619080|gb|CB624092.1|CB624092
EST:     GCGCACCAAATTCTGAGGAAAAATCAGTCCCTATGGAAACTGATGCCAAG                         GTTGAGCCATCAAAGAAGAAAGTAAAGAAAACTAATGTTCCAGTTGCTGAG
genomic: GCGCACCAAATTCTGAGGAAAAATCAGTCCCTATGGAAACTGATGCCAAGgtaaattttc ... aaaactgcagGTTGAGCCATCAAAGAAGAAAGTAAAGAAAACTAATGTTCCAGTTGCTGAG
EST: gi|58611243|gb|CK038955.1|CK038955
EST:     GCGCACCAAATTCTGAGGAAAAATCAGTCCCTATGGAAACTGATGCCAAG                         GTTGAGCCATCAAAGAAGAAAGTAAAGAAAACTAATGTTCCAGTTGCTGAG
genomic: GCGCACCAAATTCTGAGGAAAAATCAGTCCCTATGGAAACTGATGCCAAGgtaaattttc ... aaaactgcagGTTGAGCCATCAAAGAAGAAAGTAAAGAAAACTAATGTTCCAGTTGCTGAG