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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCCGCCTTTTCAACGATTGTTTCGCTATGACGTTTCTCCATGCTGCCATGGTTTTGATTATGTATCACAAGTGGTACCTTGGTCTAGTAATTTTCAGgtgattaccaacaatatgatactgcatccatgtgctttaagatatcattttcattaatacttatcaatttgctttagaacttgctgaaatcactcttcctccag

Basic information

species Oryza sativa
transcript LOC_Os01g07720.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07720.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G066362_T01 (Zea mays), 5'ss of exon 5
TGCTCCGCCTTTTCAACGATTGTTTCGCTATGACGTTTCTCCATGCTGCCATGGTTTTGATTATGTATCACAAGTGGTACCTTGGTCTAGTAATTTTCAGgtgattaccaacaatatgatact-----gcatccatgtgctttaag---atatcattttcattaatacttatcaatttgctttaga--acttgctgaaatcactcttcctccag-------
| ||||| |||||||| || || ||||| ||||| || ||||| ||||| ||||||||||| || |||| |||||||||||||||||||||| |||||||||||  |     | ||||| | |     ||||  || |||||        | | | | |    ||     |  |  | | |  | |  |  |||| | ||   | |||||           
TTCTCCGTCTTTTCAATGACTGCTTCGCCATGACATTGCTCCACGCTGCTATGGTTTTGATCATTTATCGCAAGTGGTACCTTGGTCTAGTAGTTTTCAGgtgaccat-ggtagtatgacagtaaatggcatttatctgcttcttctttgttttaatgtggccaagctgaaagaggtaggtggaaagtatctgctcatattcattttcctttttttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38472084|gb|CF956215.1|CF956215
EST:     ATGGTTTTGATTATGTATCACAAGTGGTACCTTGGTCTAGTAATTTTCAG                         TGCAGCTGTCTCCATTAAGATGAATGTGCTTCTTTTTGCTCCATCG
genomic: ATGGTTTTGATTATGTATCACAAGTGGTACCTTGGTCTAGTAATTTTCAGgtgattacca ... cttcctccagTGCAGCTGTCTCCATTAAGATGAATGTGCTTCTTTTTGCTCCATCG