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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCCCTGAGAAGTTCTTTGTATCAAAAGAGCTAGCTGTTGCATTGTTGGTTCTTCACCTCACTACTCTTTTGGTCTTTGCACACTACAAGTGGCTTAAgtaagtattcaggttgtctgtgatcgattgtattgatattattgtatgatctaggcttgcatccctatgtatgctcttatggaaaagcttgtaactctcc...

Basic information

species Oryza sativa
transcript LOC_Os01g07720.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07720.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G066362_T01 (Zea mays), 5'ss of exon 9
TTGTCCCTGAGAAGTTCTTTGTATCAAAAGAGCTAGCTGTTGCATTGTTGGTTCTTCACCTCACTACTCTTTTGGTCTTTGCACACTACAAGTGGCTTAAgtaagtattcaggttgtctgtgatcgattgtattgatattattgtatgatctaggcttgcatccctatgtatgctcttatggaaaagcttgtaactctcc------
| ||||| |||||| | |||||||| |||||||| ||  ||||||||||| ||||||||||||| || ||| || | ||||| |||||||||||| | |||| |||| |||         || |    |||| |||  |||    ||||||||  ||    ||  ||         | |   ||  | || |   ||||       
TCGTCCCAGAGAAGGTGTTTGTATCGAAAGAGCTTGCCATTGCATTGTTGATTCTTCACCTCACCACACTTATGATATTTGCTCACTACAAGTGGTTAAAgtgagtactca--ccactcatg-ttaggtgtaatga-gttagca-atgatctacactcatctcaatagtccaatagtcactcaatggttt-tctttctctagtata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33800779|gb|CF326261.1|CF326261
EST:     GTTCTTCACCTCACTACTCTTTTGGTCTTTGCACACTACAAGTGGCTTAA                         GCATGAGGGTGGCTTGTTCCATTTCTTGCATTCCAGATTCAAAGATGCCAC
genomic: GTTCTTCACCTCACTACTCTTTTGGTCTTTGCACACTACAAGTGGCTTAAgtaagtattc ... atgttgacagGCATGAGGGTGGCTTGTTCCATTTCTTGCATTCCAGATTCAAAGATGCCAC