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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGTGTTGGAGTTGCAACTGTGACTGACCTGCAGCTTAATGCTGTGGGATCTGTCCTGTCTTTGCTCGCAATCATTACAACCTGCATTGCTCAAATCgtatccttttgacagcaagtgatattttcgtttatgaaacgttatatgtttgccaaataatctgcacatcaccatctaaagaaaacagtccacatgtatt...

Basic information

species Oryza sativa
transcript LOC_Os01g07310.4
intron # 5
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07310.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 5
TTTTGGTGTTGGAGTTGCAACTGTGACTGACCTGCAGCTTAATGCTGTGGGATCTGTCCTGTCTTTGCTCGCAATCATTACAACCTGCATTGCTCAAATCgtatccttttgacagcaagtgatattttcgtttatgaaacgttatatgtttgccaaataatc---tgcacatcaccatctaaagaaaacagtccacatgtatt--
| |||||||||| ||||||||| | ||||| ||||| || ||   ||||||||||||  ||||  | || |||||||| ||||||||||||||||| |||||||||||||||  | |  |      ||  ||| |   |  |   || | || | || ||||   |||| |  || ||   | |      ||       | ||  
TCTTGGTGTTGGTGTTGCAACTATAACTGATCTGCAACTCAACCTTGTGGGATCTGTATTGTCCCTACTGGCAATCATCACAACCTGCATTGCTCAGATCgtatccttttgattgtacattgctcattattttcttttatatggcatatctgtccaagaatcatttgcatacaacaattgcatgt-----gtttgaggttgttaa

upper sequence: LOC_Os01g07310.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G116053_T01 (Zea mays), 5'ss of exon 5
TTTTGGTGTTGGAGTTGCAACTGTGACTGACCTGCAGCTTAATGCTGTGGGATCTGTCCTGTCTTTGCTCGCAATCATTACAACCTGCATTGCTCAAATCgtatccttttgacagcaagtgatattttcgtttatgaaacgttatatgtttgccaaataatctgcacatcaccatctaaagaaaacagtccacatgt-att-------------------------------------------------------------------
| |||||||||| ||||||||||| ||||| ||||| || || | | |||||||||| |||||  | || |||||||| ||||||||||| ||||| |||||||||||||||  | |  | |        ||| |   | ||   || | || || |  |||   |          || |  ||||  | ||  ||  | |                                                                   
TCTTGGTGTTGGTGTTGCAACTGTAACTGATCTGCAACTCAACGTTATGGGATCTGTACTGTCCCTACTGGCAATCATCACAACCTGCATCGCTCAGATCgtatccttttgattgtacattac-ccactattttttttatgtggcatatctgtcacagtatccagaaccatttgcatacaccaaactttgcatttgccactaaagcatcctgtaatttgagtattagtgttctgtggcgtataacttgagtccttaacaagccatcag

upper sequence: LOC_Os01g07310.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA06G14980.1 (Glycine max), 5'ss of exon 5
TTTTGGTGTTGGAGTTGCAACTGTGACTGACCTGCAGCTTAATGCTGTGGGATCTGTCCTGTCTTTGCTCGCAATCATTACAACCTGCATTGCTCAAATCgtatccttttgacagcaagtgatattttcgtttatgaaacgttatatgtttgccaaataatctgcacatcaccatctaa-agaaaacagtccacatgtatt-
| | ||||||||| ||||||| || ||||| ||||| || |||||| |||| ||| || | |||||||||||  | |||||||| ||  ||||||| || |||||||||    |       || || |   ||    || ||| |   |    | || ||||   | |  |  |||||  |      ||   | ||| ||| 
TCTGGGTGTTGGAATTGCAACCGTTACTGATCTGCAACTCAATGCTTTGGGCTCTTTCTTATCTTTGCTCGCGGTGATTACAACATGTGTTGCTCAGATTgtatcctttaagaaagttccaattttgttagttgctcaa-gtttttaatgaaactaagaatc-aaataaaaaaatctactatgctttagcttatatgcattc

upper sequence: LOC_Os01g07310.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv06s0004g07960.t01 (Vitis vinifera), 5'ss of exon 6
TTTTGGTGTTGGAGTTGCAACTGTGACTGACCTGCAGCTTAATGCTGTGGGATCTGTCCTGTCTTTGCTCGCAATCATTACAACCTGCATTGCTCAAATCgtatccttttgacagcaagtgatattttcgtt-tatgaaacgttatatgtttgccaaataatctgcacatcaccatc--taaagaaaacagtccacatgtatt
||| ||||||||  ||||||| ||||||||  ||||||| |||||  |||| |||||| | |||||||| ||| | ||||||||||| || ||||| || ||||||||    | | ||  | |||     ||  ||   || |    | |   ||      ||| || ||  | |    | ||  |   |    || |||   
TTTGGGTGTTGGGATTGCAACGGTGACTGATTTGCAGCTCAATGCCCTGGGTTCTGTCTTATCTTTGCTTGCAGTTATTACAACCTGTATCGCTCAGATTgtatcctta-agctgaaaaagctatcgctattacattgtacttctgctttagacctgtgcctctacaaatttctaatattgaaatagctataatacttgtg--