1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTACGATATGCAAGACAGAACATGGAACAGATCCTTGAAGCTATTAGGATTGCTAAACAAGAAGGTCTCTCAGTATCATTGGATTTGGCTAGTTTTGAGgtctgaccgcagctcattggtaccgtaaggtctttttttggtacaggcaccagtctgattttgtttatttattacacag
species | Oryza sativa |
transcript | LOC_Os01g01620.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGCTAAACAAGAAGGTCTCTCAGTATCATTGGATTTGGCTAGTTTTGAG ATGGTTCGTGACTATAGGACACAACTCATTGACCTTTTGGAAACTGGCAACEST: gi|33681531|gb|CF309770.1|CF309770
genomic: TTGCTAAACAAGAAGGTCTCTCAGTATCATTGGATTTGGCTAGTTTTGAGgtctgaccgc ... tattacacagATGGTTCGTGACTATAGGACACAACTCATTGACCTTTTGGAAACTGGCAAC
EST: TGCTAAACAAGAAGGTCTCTCAGTATTCATTGGGTTTGGCTAGTTTTGAG ATGGTTCGTGACTATAGGACACAACTCATTGACCTTTTGGAAACTGGCAACEST: gi|29668431|gb|CB664706.1|CB664706
genomic: TGCTAAACAAGAAGGTCTCTCAGTAT-CATTGGATTTGGCTAGTTTTGAGgtctgaccgc ... tattacacagATGGTTCGTGACTATAGGACACAACTCATTGACCTTTTGGAAACTGGCAAC
EST: TTGCTAAACAAGAAGGTCTCTCAGTATCATTGGATTTGGCTAGTTTTGAG ATGGTTCGTGACTATAGGACACAACTCATTGACCTTTTGGAAACTGGCAACEST: gi|42591940|gb|CK738426.1|CK738426
genomic: TTGCTAAACAAGAAGGTCTCTCAGTATCATTGGATTTGGCTAGTTTTGAGgtctgaccgc ... tattacacagATGGTTCGTGACTATAGGACACAACTCATTGACCTTTTGGAAACTGGCAAC
EST: TTGCTAAACAAGAAGGTCTCTCAGTATCATTGGATTTGGCTAGTTTTGAG ATGGTTCGTGACTATAGGGACCCA-CTCATTGACCTTTGGGAAACTGGCCAEST: gi|88956833|gb|CI009055.1|CI009055
genomic: TTGCTAAACAAGAAGGTCTCTCAGTATCATTGGATTTGGCTAGTTTTGAGgtctgaccgc ... tattacacagATGGTTCGTGACTATAGG-ACACAACTCATTGACCTTTTGGAAACTGGCAA
EST: TTGCTAAACAAGAAGGTCTCTCAGTATCATTGGATTTGGCTAGTTTTGAG ATGGTTCGTGACTATAGGACACAACTCATTGACCTTTTGGAAACTGGCAAC
genomic: TTGCTAAACAAGAAGGTCTCTCAGTATCATTGGATTTGGCTAGTTTTGAGgtctgaccgc ... tattacacagATGGTTCGTGACTATAGGACACAACTCATTGACCTTTTGGAAACTGGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTACGATATGCAAGACAGAACATGGAACAGATCCTTGAAGCTATTAGGATTGCTAAACAAGAAGGTCTCTCAGTATCATTGGATTTGGCTAGTTTTGAGgtctgaccgcagctcattggtaccgtaaggtctttttttggtacaggcaccagtctgattttgtttatttattacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG