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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGgtacggaacttcttcttgagatgagttgagttgaaatagttaagagcctgtttggtagagctccaacaccaaaatttagctacaggagttgggtctgaag...

Basic information

species Oryza sativa
transcript 13114.m00152
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: 13114.m00152 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G461569_T01 (Zea mays), 5'ss of exon 16
TTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGgtacggaacttcttcttgagatgagttgagt-tgaaatagttaagagcctgtttggtagagctccaacaccaaaatttagctacaggagttgggtctgaag
 |||||||| || || ||||||||| ||||| ||||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||| |||     |||    |||    ||| | | ||  | ||     | | |    |   | | | |    |     ||   | || |||    |      
ATCTTTCTTCGGCGCTAAACCAGAACTGGTTGTAAAGGGAGGTGCAATTGCATGGGCTAACATGGGTGATCCCAATGCTAGCATTCCAACACCTGAACCTgtatggactcctttcaatggatactctgaatataaagaatttgtctacttttaccatgatgtttccat-ttagcccatataaatagaagtcaatttcacta

upper sequence: 13114.m00152 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA05G27840.1 (Glycine max), 5'ss of exon 16
TTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGgtacggaacttcttcttgagatgagttgagttgaaatagttaag-agcctgtttggtagagctccaacaccaaaatttagctacaggagt-tgggtctgaag
 ||||| ||||| ||||||||||||||||| || || ||||| |   ||||||| ||| |||||||||| |||||||| ||||| || || ||||||||||||   |  || |   |   |  ||||  | |  | |  ||||| ||  ||  |  |  |    |         |||||| | |   | | | | |||  | 
ATCTTTTTTTGGGGCAAAACCAGAAATGGTGATCAAAGGTGGGGTGGTTGCATGGGCTGATATGGGTGACCCAAATGCAAGCATCCCCACTCCTGAACCGgta--aagtttttgtatctaactagtttggcttgagtttttaagtagagtgcctcttgcatagtcttttttggtatttagattccttaatgttgttctatat

upper sequence: 13114.m00152 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 17
TTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGgtacggaacttcttc---ttgagatgag-ttgagttgaaatagttaagagcctgtttggtagagctccaacaccaaaatttagctacaggagttgg---gtctgaag-------------------------
 || || ||||||||||||||||||||||| || || |||||||   ||||||  ||||| |||||||| |||||||| ||||| ||||||||||||||||||  |   |  |     ||| |||  | |  |||   ||  | |   |  || |||   |   | |   ||  ||  |||| | |    | | |    |  | ||                          
GTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgttttcatatgcattgggatatgatccagtgccaactggtgccaaacttttttaaatcacactttcaataacttttatccatctaaatagaaatgcttcaactaaactaggaaactcaatcttgtag

upper sequence: 13114.m00152 (Oryza sativa), 5'ss of exon 5
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 16
TTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGgtacggaacttcttcttgagatgagttgagttgaaatagttaagagcctgtttggtagagct-ccaacaccaaaatttagctacaggagttgggtctgaag
  ||||||| |||||||||||||||||| | || || || ||   ||| ||||| ||||||||||| ||| ||||||| ||||| || || ||||| ||||||    | | ||   |   |     |    |    |  || | | |  || |   |   |   |    |    ||||    |  | ||            
GGCTTTCTTCGGAGCAAAACCAGAAATGATAATCAAAGGAGGCAATATAGCATGGGCTAATATGGGCGATGCAAATGCGAGCATACCCACTCCTGAGCCGgta-atcattactgactactagattctagactcgttttcttgacaacacgtctctaaagacggtcctttcttttattttatgatggtag------------

upper sequence: 13114.m00152 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 16
TTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGgtacggaacttcttcttgagatgagttgagttgaaatagttaagagcctgtttggtagagctccaacaccaaaatttagctacag-gagttg-ggtctgaag-
 ||||||||||| ||||||||||||||||| ||||| |||||||  |||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||   || |  || |    |||| || |    | |  |  ||| |        || ||    |       | |||   |   ||  | |||   | | | | 
ATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGgta---aattatttttattaatgaatttataacatactgagaagggaaaagaaagtggaaacaccctgtttacattgttcatgagcaaattgcaatttaatga