1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTGCGTTGGCTGATATTTTTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTGgtatgaattctactgctttcagttcgatggaaatggagtcctgaatttgggatatttgcgctgatcttaactgtgctgattgatatgtgtag
species | Oryza sativa |
transcript | 13114.m00108 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTG AGTGGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCCEST: gi|86906380|gb|CI294503.1|CI294503
genomic: TTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTGgtatgaattc ... atatgtgtagAGTGGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCC
EST: TTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTG AGTGGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCCEST: gi|14980567|gb|BI305245.1|BI305245
genomic: TTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTGgtatgaattc ... atatgtgtagAGTGGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCC
EST: TTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTG AGTGGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCCEST: gi|29668134|gb|CB664409.1|CB664409
genomic: TTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTGgtatgaattc ... atatgtgtagAGTGGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCC
EST: TTCTGAGAGGCACAGAGCTCATGANAGACGCTCGAGGGATTGCATCCCTG AGTGGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCCEST: gi|33679460|gb|CF307699.1|CF307699
genomic: TTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTGgtatgaattc ... atatgtgtagAGTGGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCC
EST: TTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTG AGTGGCTTGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCCEST: gi|58609210|gb|CK037243.1|CK037243
genomic: TTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTGgtatgaattc ... atatgtgtagAGTGGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCC
EST: TTCTGAGAGGCACAGAGCTCATGAAAGACGCGCGAGGGATTGCATCCCTG AGTGGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCC
genomic: TTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTGgtatgaattc ... atatgtgtagAGTGGCATGGTGCCTCCATTTGTTCCATTTGCTCAAACGTTTGCAGCAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCGTTGGCTGATATTTTTCTGAGAGGCACAGAGCTCATGAAAGACGCTCGAGGGATTGCATCCCTGgtatgaattctactgctttcagttcgatggaaatggagtcctgaatttgggatatttgcgctgatcttaactgtgctgattgatatgtgtag
- - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - AGCTCA