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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' | 39 5' 3' | 40 5' 3' |
41 5' 3' | 42 5' 3' | 43 5' 3' | 44 5' 3' | 45 5' 3' | 46 5' 3' | 47 5' 3' | 48 5' 3' | 49 5' 3' | 50 5' 3' | 51 5' 3' |
AATGCTGACTCCATCTGGAACTATGGGCCAAACTCACTGGGGTGATGCAGGGTCCAATAATCCAAACCCATCAACTCATTCAACTGACGCACAGTTGAAGgtagtattactgattcttaactaacataacatttgtaaattactgcttgcaaatttgtacagcaattgatgttctattttgtctttcttttgattatgggtag
species | Oryza sativa |
transcript | LOC_Os01g60040.2 |
intron # | 48 |
splice site | 5' |
intron type | U2 |
EST: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGATGCACAGTTGAAG CAAGAGCTTGCTGCTGTATTCAAGAAAATCGGTGACAAACAAACATGTACAEST: gi|58601380|gb|CK011908.1|CK011908
genomic: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGACGCACAGTTGAAGgtagtattac ... ttatgggtagCAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACA
EST: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGATGCACAGTTGAAG CAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACAEST: gi|58600986|gb|CK011514.1|CK011514
genomic: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGACGCACAGTTGAAGgtagtattac ... ttatgggtagCAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACA
EST: GTCCAATAATCCAAACCCATCAACTCATTCAACGTGATGCACAGTTGAAG CAAGAGCTTGCTGCTGTATCCAAGAAAATTGGTGACAAACAAACATGTACAEST: gi|29680245|gb|CB676520.1|CB676520
genomic: GTCCAATAATCCAAACCCATCAACTCATTCAAC-TGACGCACAGTTGAAGgtagtattac ... ttatgggtagCAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACA
EST: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGACGCACAGTTGAAG CAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACAEST: gi|218497579|gb|FG955134.1|FG955134
genomic: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGACGCACAGTTGAAGgtagtattac ... ttatgggtagCAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACA
EST: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGATGCACAGTTGAAG CAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACAEST: gi|88344329|gb|CI655723.1|CI655723
genomic: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGACGCACAGTTGAAGgtagtattac ... ttatgggtagCAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACA
EST: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGACGCACAGTTGAAG CAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACAEST: gi|58677253|gb|CK065940.1|CK065940
genomic: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGACGCACAGTTGAAGgtagtattac ... ttatgggtagCAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACA
EST: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGATGCACAGTTGAAG CAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACAEST: gi|58690696|gb|CK079383.1|CK079383
genomic: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGACGCACAGTTGAAGgtagtattac ... ttatgggtagCAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACA
EST: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGATGCACAGTTGAAG CAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACA
genomic: GGTCCAATAATCCAAACCCATCAACTCATTCAACTGACGCACAGTTGAAGgtagtattac ... ttatgggtagCAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGCTGACTCCATCTGGAACTATGGGCCAAACTCACTGGGGTGATGCAGGGTCCAATAATCCAAACCCATCAACTCATTCAACTGACGCACAGTTGAAGgtagtattactgattcttaactaacataacatttgtaaattactgcttgcaaatttgtacagcaattgatgttctattttgtctttcttttgattatgggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG