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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGACACTGCATTTGAGAAGCAAAGTTCGTTGTTTGCTCTTGCAATTTCAGACATAGTTCTAATTAACATgtgagttactcaattgttcaactctactactgagctcatattatgaaaattcctcatagccttctaggttgaactttaatatataattcatcaacttcatgactttgtattaccaccatatgtatgtcgatag

Basic information

species Oryza sativa
transcript LOC_Os12g41170.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G390374_T01 (Zea mays), 5'ss of exon 4
GACGACACTGCATTTGAGAAGCAAAGTTCGTTGTTTGCTCTTGCAATTTCAGACATAGTTCTAATTAACATgtgagttactcaattgttcaactctactactgagctcatattatgaaaattcctcatagccttctaggttgaactttaatatataattcatcaacttcatgactttgtattaccaccatatgtatgtcgatag
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |   |||   |   |  |||                 | |||| | ||| ||| |  ||||||| || |  ||| |       ||| ||| ||||  | ||| | | || | |||||  | ||
GATGACACTGCATTTGAGAAGCAAAGTTCGTTATTTGCACTTGCAATTTCAGACATAGTTCTAATTAACATgtgagtcaccc---tgtatgatattgttac----------------gagttccccttagacttatttgttgaacctttagttatcac------actacat-acttaattttatctctatgtttatgtgtacag

upper sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G052619_T01 (Zea mays), 5'ss of exon 4
GACGACACTGCATTTGAGAAGCAAAGTTCGTTGTTTGCTCTTGCAATTTCAGACATAGTTCTAATTAACATgtgagttactcaattgttcaactctactactgagctcatattatgaaaattcctcatagccttctaggttgaactttaatatataattcatcaacttcatgactttgtattaccaccatatgtatgtcgatag
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |   | |   |   |  |  |||  ||              ||| || | ||| |  ||||||| || |  | | |  ||   ||| || |||||| | ||| ||| || |||||||  ||||
GATGACACTGCATTTGAGAAGCAAAGTTCGTTATTTGCTCTTGCAATTTCAGATATAGTTCTAATTAACATgtgagtcaccc---tatatgatatttgtgatgacttc--------------ccttatggacttatttgttgaacctttagttttca--cacttactaca-gactttttgttatcactatgtgtatgtgtatag

upper sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 5'ss of exon 3
GACGACACTGCATTTGAGAAGCAAAGTTCGTTGTTTGCTCTTGCAATTTCAGACATAGTTCTAATTAACATgtgagttactcaattgttcaactctactactgagctcatattatgaaaattcctcatagccttctaggttgaactttaatatataattcatcaacttcatgactttgtattaccaccatatgtatgtcgatag
|| || |||||||||||||| |||||| | ||||||||| | ||||| |||||||| || || || ||||||||||||  | | || |   | |||| | ||    | ||    |     ||||| | |   |  || |||||   ||| | |  |  || |   ||   ||   |||   |                      
GATGATACTGCATTTGAGAAACAAAGTGCCTTGTTTGCTTTGGCAATATCAGACATTGTGCTGATAAACATgtgagtt--ttagtt-tagcattctagtgctt--ttaatgcctttttctttccttaca---tgataagttgatggtta-tctgcatctcgt--gctagctgtggttgatct----------------------