1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATAGTCTGGGTCGTACCTGCTCAAATTTGAGAAACCTGCACATATCCTCAATTCATTTATGCAATGAAGCTGTGTTTTCTCTAGAGAGTGCTAATCTCAGgtacttaatatatgctgctcatttgtcatgaatcatgttagggggagtcttgttataattataatttcttgagttaaatcctcaacccatcttttttcttgttttatcag
species | Oryza sativa |
transcript | LOC_Os12g40860.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTCATTTATGCAATGAAGCTGTGTTTTCTCTAGAGAGTGCTAATCTCAG GGGCCTATGCATGCTATCCTTGATTCTTGGTTCAAAAATAACAGATGCAGCEST: gi|58679000|gb|CK067687.1|CK067687
genomic: ATTCATTTATGCAATGAAGCTGTGTTTTCTCTAGAGAGTGCTAATCTCAGgtacttaata ... gttttatcagGGGCCTATGCATGCTATCCTTGATTCTTGGTTCAAAAATAACAGATGCAGC
EST: ATTCATTTATGCAATGAAGCTGTGTTTTCTCTAGAGAGTGCTAATCTCAG GGGCCTATGCATGCTATCCTTGATTCTTGGTTCAAAAATAACAGATGCAGC
genomic: ATTCATTTATGCAATGAAGCTGTGTTTTCTCTAGAGAGTGCTAATCTCAGgtacttaata ... gttttatcagGGGCCTATGCATGCTATCCTTGATTCTTGGTTCAAAAATAACAGATGCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGTCTGGGTCGTACCTGCTCAAATTTGAGAAACCTGCACATATCCTCAATTCATTTATGCAATGAAGCTGTGTTTTCTCTAGAGAGTGCTAATCTCAGgtacttaatatatgctgctcatttgtcatgaatcatgttagggggagtcttgttataattataatttcttgagttaaatcctcaacccatcttttttcttgttttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG