Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCCTGCTGGTGTGGGGCTGTCATACTCCAAGAATACTTCGGATTATAACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatatatgtgtgttctataattttcagtatggtgaattaaaatcatctgcctgtgcaagatagctgaattttgttatatcttgtcagcag

Basic information

species Oryza sativa
transcript LOC_Os12g15470.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117240321|gb|CT842747.1|CT842747
EST:     CACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAAG                         TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGG
genomic: CACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTG-AAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGG
EST: gi|29659836|gb|CB656111.1|CB656111
EST:     ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAG                         TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
EST: gi|29668081|gb|CB664356.1|CB664356
EST:     ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAG                         TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
EST: gi|58695212|gb|CK083899.1|CK083899
EST:     ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAG                         TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
EST: gi|88721922|gb|CI743434.1|CI743434
EST:     ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAG                         TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
EST: gi|33801783|gb|CF326764.1|CF326764
EST:     ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAG                         TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
EST: gi|58660840|gb|CK049520.1|CK049520
EST:     ACACCGGGGACCTCAAGAACGCCGCGGATTCGCATACTTTTCTTCTGAAG                         TGGTTTCAGCTGTACCCT
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCT
EST: gi|88399116|gb|CI603783.1|CI603783
EST:     ACACCGGGGACCTCAAGACTGCCGCGGATTCGCATACTTTTCTTCTGAAG                         TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
EST: gi|4715276|gb|AU056393.1|AU056393
EST:     ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAG                         TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCCCCTGCTGGTGTGGGGCTGTCATACTCCAAGAATACTTCGGATTATAACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatatatgtgtgttctataattttcagtatggtgaattaaaatcatctgcctgtgcaagatagctgaattttgttatatcttgtcagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG