1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGCCATGCATTATGTGGCTGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGGgtaagtagtattatccattaattatttagcatgtgcatggtcaattaactaacttgataattatcctcatctgattgttaattatatatcttgttaattttaattctttatatatttttggtgcctcag
species | Oryza sativa |
transcript | LOC_Os12g14100.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGG TTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGTEST: gi|88295265|gb|CI525418.1|CI525418
genomic: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGGgtaagtagta ... ggtgcctcagTTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGT
EST: GAGGTTTGGCTTGTCCTGGTGCATCAACTGG TTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGTEST: gi|88459833|gb|CI524292.1|CI524292
genomic: GAGGTTTGGCTTGTCCTGGTGCATCAACTGGgtaagtagta ... ggtgcctcagTTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGT
EST: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGG TTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGTEST: gi|88259822|gb|CI364313.1|CI364313
genomic: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGGgtaagtagta ... ggtgcctcagTTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGT
EST: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGG TTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGTEST: gi|88255841|gb|CI353712.1|CI353712
genomic: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGGgtaagtagta ... ggtgcctcagTTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGT
EST: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGG TTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGTEST: gi|88437345|gb|CI528704.1|CI528704
genomic: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGGgtaagtagta ... ggtgcctcagTTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGT
EST: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGG TTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGTEST: gi|86864894|gb|CI343939.1|CI343939
genomic: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGGgtaagtagta ... ggtgcctcagTTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGT
EST: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGG TTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGTEST: gi|88322273|gb|CI537856.1|CI537856
genomic: TGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGGgtaagtagta ... ggtgcctcagTTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGT
EST: ATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGG TTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGT
genomic: ATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGGgtaagtagta ... ggtgcctcagTTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCCATGCATTATGTGGCTGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCAACTGGgtaagtagtattatccattaattatttagcatgtgcatggtcaattaactaacttgataattatcctcatctgattgttaattatatatcttgttaattttaattctttatatatttttggtgcctcag
- - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - AAGAGG