1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TACGATGCAATATCAAGACTGGAAAAGGCAGCAGAACAAGGGAGTGCAATAGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcactggatattattatcaattacttcactctttctcactcttgaaactgaaagtacaccgtgcataacatgtactatttatggtacattttatg...
species | Oryza sativa |
transcript | LOC_Os12g07190.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAG CTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTTEST: gi|29616351|gb|CB621363.1|CB621363
genomic: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcact ... gtggatacagCTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTT
EST: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAG CTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTTEST: gi|29658205|gb|CB654480.1|CB654480
genomic: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcact ... gtggatacagCTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTT
EST: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAG CTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTTEST: gi|58605735|gb|CK033768.1|CK033768
genomic: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcact ... gtggatacagCTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTT
EST: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAG CTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTTEST: gi|58612797|gb|CK040509.1|CK040509
genomic: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcact ... gtggatacagCTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTT
EST: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAG CTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTTEST: gi|29620736|gb|CB625747.1|CB625747
genomic: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcact ... gtggatacagCTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTT
EST: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAG CTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTTEST: gi|29683887|gb|CB680162.1|CB680162
genomic: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcact ... gtggatacagCTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTT
EST: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAG CTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTTEST: gi|58663826|gb|CK052512.1|CK052512
genomic: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcact ... gtggatacagCTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTT
EST: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAG CTCCTTATGCTTTEST: gi|58693946|gb|CK082633.1|CK082633
genomic: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcact ... gtggatacagCTCCTTATGCTTT
EST: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAG CTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTTEST: gi|29617498|gb|CB622510.1|CB622510
genomic: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcact ... gtggatacagCTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTT
EST: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAG CTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTT
genomic: AGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcact ... gtggatacagCTCCTTATGCTTTCATAGAAACTCTAAGAGAGAGGATGTTCAAACCTTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGATGCAATATCAAGACTGGAAAAGGCAGCAGAACAAGGGAGTGCAATAGCAGCTGCTGTAGAAGGGGTAGAGCGTCAATTAGGAGGCAACTTTTCAGgtactgcactggatattattatcaattacttcactctttctcactcttgaaactgaaagtacaccgtgcataacatgtactatttatggtacattttatg
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT