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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATGATGCCATTATTGTTGGCCAAAATCTTGTTTCCTGTTCCTCAGATACCACTCTAAAGgtctgttgtttcagcagtttttatatattcattttggatccacatgttttttaattcctaattgtttcacag

Basic information

species Oryza sativa
transcript LOC_Os12g06810.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g06810.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G167999_T02 (Zea mays), 5'ss of exon 4
GTTAATGATGCCATTATTGTTGGCCAAAATCTTGTTTCCTGTTCCTCAGATACCACTCTAAAGgtctgttgtttcag-----cagtttttatatattcattt--tggatccacatgttttttaattcctaattgtttcacag
||||||||||||||||| |||||  | || ||||||||||| |||||||| || ||  ||||||| |||||| | |      |  || ||| |||||  |||  || |    ||||| ||| | ||||  |    | |||||
GTTAATGATGCCATTATAGTTGGAGACAAGCTTGTTTCCTGCTCCTCAGACACTACAATAAAGgtttgttgtctaacactttctcttcttaaatattattttgctgaacatgcatgtgtttcatttcccta--actacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117217320|gb|CT852008.1|CT852008
EST:     TTATTGTTGGCCAAAATCTTGTTTCCTGTTCCTCAGATACCACTCTAAAG                         GTGTGGAATTGTTTATCAGATGGTGCTTGTACCAGGACTCTCCGCCAGCAT
genomic: TTATTGTTGGCCAAAATCTTGTTTCCTGTTCCTCAGATACCACTCTAAAGgtctgttgtt ... tgtttcacagGTGTGGAATTGTTTATCAGATGGTGCTTGTACCAGGACTCTCCGCCAGCAT
EST: gi|87023589|gb|CI286340.1|CI286340
EST:     TTATTGTTGGCCAAAATCTTGTTTCCTGTTCCTCAGATACCACTCTAAAG                         GTGTGGAATTGTTTATCAGATGGTGCTTGTACCAGGACTCTCCGCCAGCAT
genomic: TTATTGTTGGCCAAAATCTTGTTTCCTGTTCCTCAGATACCACTCTAAAGgtctgttgtt ... tgtttcacagGTGTGGAATTGTTTATCAGATGGTGCTTGTACCAGGACTCTCCGCCAGCAT
EST: gi|29666968|gb|CB663243.1|CB663243
EST:     TTATTGTTGGCCAAAATCTTGTTTCCTGTTCCTCAGATACCACTCTAAAG                         GTGTGGAATTGTTTATCAGATGGTGCTTGTACCAGGACTCTCCGCCAGCAT
genomic: TTATTGTTGGCCAAAATCTTGTTTCCTGTTCCTCAGATACCACTCTAAAGgtctgttgtt ... tgtttcacagGTGTGGAATTGTTTATCAGATGGTGCTTGTACCAGGACTCTCCGCCAGCAT
EST: gi|29678629|gb|CB674904.1|CB674904
EST:     TTATTGTTGGCCAAAATCTTGTTTCCTGTTCCTCAGATACCACTCTAAAG                         GTGTGGAATTGTTTATCAGATGGTGCTTGTACCAGGACTCTCCGCCAGCAT
genomic: TTATTGTTGGCCAAAATCTTGTTTCCTGTTCCTCAGATACCACTCTAAAGgtctgttgtt ... tgtttcacagGTGTGGAATTGTTTATCAGATGGTGCTTGTACCAGGACTCTCCGCCAGCAT