1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGCCCAGCAGCTTCATCTGTTATATTGAAATTTGAGCTGATATATGCCCCAACGCTGGAGAATGGgtgagcagatactttgtaaccctatatatagtgctttcgatacagtgcacattgtcgagttcgcattcataatttcatattatgaaatttggattttaagtcatcaatactaatgctgctatcttctgtag
species | Oryza sativa |
transcript | LOC_Os12g06800.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTGTTATATTGAAATTTGAGCTGATATATGCCCCAACGCTGGAGAATGG GTCGGATATTCAAGCTTCTAGTGCCACTTCTTCGGCTGCTGTTCATGAATTEST: gi|58656122|gb|CK044802.1|CK044802
genomic: TCTGTTATATTGAAATTTGAGCTGATATATGCCCCAACGCTGGAGAATGGgtgagcagat ... tcttctgtagGTCTGATATTCAAGCTTCTAGTGCCACTTCTTCGGCTGCTGTTCATGAATT
EST: TCTGTTATATTGAAATTTGAGCTGATATATGCCCCAACGCTGGAGAATGG GTCTGATATTCAAGCTTCTAGTGCCACTTCTTCGGCTGCTGTTCATGAATTEST: gi|58667626|gb|CK056312.1|CK056312
genomic: TCTGTTATATTGAAATTTGAGCTGATATATGCCCCAACGCTGGAGAATGGgtgagcagat ... tcttctgtagGTCTGATATTCAAGCTTCTAGTGCCACTTCTTCGGCTGCTGTTCATGAATT
EST: TCTGTTATATTGAAATTTGAGCTGATATATGCCCCAACGCTGGAGAATGG GTCTGATATTCAAGCTTCTAGTGCCACTTCTTCGGCTGCTGTTCATGAATT
genomic: TCTGTTATATTGAAATTTGAGCTGATATATGCCCCAACGCTGGAGAATGGgtgagcagat ... tcttctgtagGTCTGATATTCAAGCTTCTAGTGCCACTTCTTCGGCTGCTGTTCATGAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCCAGCAGCTTCATCTGTTATATTGAAATTTGAGCTGATATATGCCCCAACGCTGGAGAATGGgtgagcagatactttgtaaccctatatatagtgctttcgatacagtgcacattgtcgagttcgcattcataatttcatattatgaaatttggattttaagtcatcaatactaatgctgctatcttctgtag
- - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA