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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTATTGACAAAAAAGTTCCTAAACTTGCTAAAGGGTGCACCTGGCGGCATAGTTGATTTGAATAATGCCGCAGAAACACTGGAGgttaatatttccttctgtttttttctcatatcctgtttgctaacacgcctttattttgtcaagcttatatgtatgtaaaatgttttgcag

Basic information

species Oryza sativa
transcript LOC_Os12g06200.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g06200.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G086401_T01 (Zea mays), 5'ss of exon 6
GGCTATTGACAAAAAAGTTCCTAAACTTGCTAAAGGGTGCACCTGGCGGCATAGTTGATTTGAATAATGCCGCAGAAACACTGGAGgttaatatttccttctgtttttttctcatatcct-gtttgctaacacgcctttattttgtcaagcttatatgtatgtaaaatgttttgcag-------------
|||| ||||||||   |||||| || |||||||| ||||||||||| ||||| |||||| |||||||||| |||||||| || |||||| ||     ||    | ||  || ||  |  |  | | ||| ||| |   ||      | | ||       | | |   |  |     |             
GGCTCTTGACAAA---GTTCCTGAATTTGCTAAAAGGTGCACCTGGTGGCATTGTTGATCTGAATAATGCTGCAGAAACTCTAGAGgttgatcacagctgaaatgttgatcacaactattcatctactaccacacaacta----agcgacctgtagcacaaggagggtcgtccatggcgccacgctatgc

upper sequence: LOC_Os12g06200.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G829408_T01 (Zea mays), 5'ss of exon 6
GGCTATTGACAAAAAAGTTCCTAAACTTGCTAAAGGGTGCACCTGGCGGCATAGTTGATTTGAATAATGCCGCAGAAACACTGGAGgttaatatttccttctgtttttttctcatatcct-gtttgctaacacgcctttattttgtcaagcttatatgtatgtaaaatgttttgcag-------------
|||| ||||||||   |||||| ||||||||||| ||||||||||| ||||| |||||| |||||||||| |||||||| || |||||| ||     ||    | ||  || ||  |  |  | | ||| ||| |   ||      | | ||       | | |   |  |     |             
GGCTCTTGACAAA---GTTCCTGAACTTGCTAAAAGGTGCACCTGGTGGCATTGTTGATCTGAATAATGCTGCAGAAACTCTAGAGgttgatcacagctgaaatgttgatcacagctgttcatctactaccacacaacta----agcgacctgtagcacaaggagggtcgtccatggcgccacgctatgc

upper sequence: LOC_Os12g06200.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G333591_T01 (Zea mays), 5'ss of exon 6
GGCTATTGACAAAAAAGTTCCTAAACTTGCTAAAGGGTGCACCTGGCGGCATAGTTGATTTGAATAATGCCGCAGAAACACTGGAGgttaatatttccttctgtttttttctcatatcct-gtttgctaacacgcctttattttgtcaagcttatatgtatgtaaaatgttttgcag-------------
|||| ||||||||   |||||| ||||||||||| ||||||||||| ||||| |||||| |||||||||| |||||||| || |||||| ||     ||    | ||  || ||  |  |  | | ||| ||| |   ||      | | ||       | | |   |  |     |             
GGCTCTTGACAAA---GTTCCTGAACTTGCTAAAAGGTGCACCTGGTGGCATTGTTGATCTGAATAATGCTGCAGAAACTCTAGAGgttgatcacagctgaaatgttgatcacaactgttcatctactaccacacagcta----agcgacctgtagcacaaggagggtcgtccatggcgccacgctatgc

upper sequence: LOC_Os12g06200.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G029735_T01 (Zea mays), 5'ss of exon 3
GGCTATTGACAAAAAAGTTCCTAAACTTGCTAAAGGGTGCACCTGGCGGCATAGTTGATTTGAATAATGCCGCAGAAACACTGGAGgttaatatttccttctgtttttttctcatatcct-gtttgctaacacgcctttattttgtcaagcttatatgtatgtaaaatgttttgcag-------------
|||| ||||||||   | |||| || |||||||| ||||||||||| ||||| |||||| |||||||||| |||||||| || |||||| ||     ||    | ||  || ||  |  |  | | ||| ||| |   ||      | | ||       | | |   |  |     |             
GGCTCTTGACAAA---GGTCCTGAATTTGCTAAAAGGTGCACCTGGTGGCATTGTTGATCTGAATAATGCTGCAGAAACTCTAGAGgttgatcacagctgaaatgttgatcacaactgttcatctactaccacacaacta----agcgacctgtagcacaaggagggtcgtccatggcgccacactatgc

upper sequence: LOC_Os12g06200.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G052515_T01 (Zea mays), 5'ss of exon 4
GGCTATTGACAAAAAAGTTCCTAAACTTGCTAAAGGGTGCACCTGGCGGCATAGTTGATTTGAATAATGCCGCAGAAACACTGGAGgttaatatttccttctgtttttttctcatatcctgtttgctaacacgcctttattttgtcaagcttatatgtatgtaaaatgttttgcag
|||| |||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||| |||||||||| |||||||| || ||||||  |  || | |         | |  || | || |  | | || |  ||| |||||| || | |||   | | |||  | |||| |||
GGCTCTTGACAAAGAAGTTCCTGAACTTGCTAAAAGGTGCACCTGGTGGCATTGTTGATCTGAATAATGCTGCAGAAACTCTAGAGgttggtgctttcct---------tttggtaccttgatc-caatcatgg-tttcttttgttaaacatatgcatttataactt-tttttcag