1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCCTCCGTATTTGTTATACCGAAATGCTGCACAAGAAGTAAACGGTATTTGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggccttttctctaatatctcacctgcgtgacatgtttcaatctgactgggtcatttagattgggcaaacaagaaatggacagggacagatgagaac...
species | Oryza sativa |
transcript | LOC_Os12g06020.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAG GATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCACEST: gi|29676701|gb|CB672976.1|CB672976
genomic: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggcctt ... ttgggttcagGATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
EST: TGGTTTTATAACCGACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAG GATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCACEST: gi|33793549|gb|CF322657.1|CF322657
genomic: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggcctt ... ttgggttcagGATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
EST: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAG GATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCACEST: gi|58686519|gb|CK075206.1|CK075206
genomic: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggcctt ... ttgggttcagGATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
EST: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAG GATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCACEST: gi|29639082|gb|CB644091.1|CB644091
genomic: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggcctt ... ttgggttcagGATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
EST: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAG GATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCACEST: gi|29669200|gb|CB665475.1|CB665475
genomic: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggcctt ... ttgggttcagGATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
EST: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAG GATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCACEST: gi|33793116|gb|CF322439.1|CF322439
genomic: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggcctt ... ttgggttcagGATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
EST: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAG GATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCACEST: gi|58685061|gb|CK073748.1|CK073748
genomic: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggcctt ... ttgggttcagGATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
EST: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAG GATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCACEST: gi|58694565|gb|CK083252.1|CK083252
genomic: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggcctt ... ttgggttcagGATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
EST: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAG GATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCACEST: gi|29639128|gb|CB644137.1|CB644137
genomic: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggcctt ... ttgggttcagGATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
EST: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAG GATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCACEST: gi|58660010|gb|CK048690.1|CK048690
genomic: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggcctt ... ttgggttcagGATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
EST: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAG GATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
genomic: TGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggcctt ... ttgggttcagGATATTGAATGCTTACGCCAAAGTGCCTCCAAAGCCCAAAGTACCTTCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCTCCGTATTTGTTATACCGAAATGCTGCACAAGAAGTAAACGGTATTTGGTTTTATAACCAACAAGACTGTGATGCTGTTGCAGGTGTTTTTGGAAGgtaaggccttttctctaatatctcacctgcgtgacatgtttcaatctgactgggtcatttagattgggcaaacaagaaatggacagggacagatgagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG