1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATCATATATGATCGGTCGTGGTTTCGCATCGATCTTGTGGGGTATGGTGGCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcactatggtacctttcctaaaatattgacaggaatgtatccatggcatatggcatttactttgtagtctgttccatctgctaaacaatttttaacctgtctttgaatctatacttccag
species | Oryza sativa |
transcript | LOC_Os12g03860.6 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGT CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGTEST: gi|33692622|gb|CF320861.1|CF320861
genomic: GCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atacttccagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
EST: GCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGT CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGTEST: gi|33677540|gb|CF305779.1|CF305779
genomic: GCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atacttccagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
EST: GCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGT CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atacttccagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCATATATGATCGGTCGTGGTTTCGCATCGATCTTGTGGGGTATGGTGGCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcactatggtacctttcctaaaatattgacaggaatgtatccatggcatatggcatttactttgtagtctgttccatctgctaaacaatttttaacctgtctttgaatctatacttccag
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