1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACAGAAATGGAGCCATGGGCCATTAGAGTGGCCTACTTCATAGTGTTCTCCTTTCTTGTCACTGCAAGATTTGGGTCCTGTGCTCCCCACAGTGAAGAAGgtgagatgttcttttgattgctaaagattgaactgaaaggggctaatagaatggttgcttcaagtggatttggattgcaacaacctgaacatatgtaagtttgtgctttag
species | Oryza sativa |
transcript | LOC_Os12g01510.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTTCTTGTCACTGCAAGATTTGGGTCCTGTGCTCCCCACAGTGAAGAAG GGAGAGCTCTTCCGGGTTATAGAGAGAGTGAGCAAGACCAATCAATTGGCTEST: gi|33799551|gb|CF325636.1|CF325636
genomic: CTTTCTTGTCACTGCAAGATTTGGGTCCTGTGCTCCCCACAGTGAAGAAGgtgagatgtt ... tgtgctttagGGAGAGCTCTTCCGGGTTATAGAGAGAGTGAGCAAGACCAATCAATTGGCT
EST: CTTTCTTGTCACTGCAAGATTTGGGTCCTGTGCTCCCCACAGTGAAGAAG GGAGAGCTCTTCCGGGTTATAGAGAGAGTGAGCAAGACCAATCAATTGGCTEST: gi|29623656|gb|CB628667.1|CB628667
genomic: CTTTCTTGTCACTGCAAGATTTGGGTCCTGTGCTCCCCACAGTGAAGAAGgtgagatgtt ... tgtgctttagGGAGAGCTCTTCCGGGTTATAGAGAGAGTGAGCAAGACCAATCAATTGGCT
EST: CTTTCTTGTCACTGCAAGATTTGGGTCCTGTGCTCCCCACAGTGAAGAAG GGAGAGCTCTTCCGGGTTATAGAGAGAGTGAGCAAGACCAATCAATTGGCTEST: gi|11442867|gb|BF430766.1|BF430766
genomic: CTTTCTTGTCACTGCAAGATTTGGGTCCTGTGCTCCCCACAGTGAAGAAGgtgagatgtt ... tgtgctttagGGAGAGCTCTTCCGGGTTATAGAGAGAGTGAGCAAGACCAATCAATTGGCT
EST: CTTTCTTGTCACTGCAAGATTTGGGTCCTGTGCTCCCCACAGTGAAGAAG GGAGAGCTCTTCCGGGTTATAGAGAGAGTGAGCAAGACCAATCAATTGGCT
genomic: CTTTCTTGTCACTGCAAGATTTGGGTCCTGTGCTCCCCACAGTGAAGAAGgtgagatgtt ... tgtgctttagGGAGAGCTCTTCCGGGTTATAGAGAGAGTGAGCAAGACCAATCAATTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGAAATGGAGCCATGGGCCATTAGAGTGGCCTACTTCATAGTGTTCTCCTTTCTTGTCACTGCAAGATTTGGGTCCTGTGCTCCCCACAGTGAAGAAGgtgagatgttcttttgattgctaaagattgaactgaaaggggctaatagaatggttgcttcaagtggatttggattgcaacaacctgaacatatgtaagtttgtgctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG