1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAGgtagtctcctcatccaatggcttgcactttatacttatacatgatgactgcctatgcttgatatgagctttttttttgccatatattccactgcag
species | Oryza sativa |
transcript | LOC_Os12g01430.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG ATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGTEST: gi|33686639|gb|CF314878.1|CF314878
genomic: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAGgtagtctcct ... tccactgcagATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGC
EST: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG ATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGCEST: gi|163918505|gb|EG711435.1|EG711435
genomic: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAGgtagtctcct ... tccactgcagATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGC
EST: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG ATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGCEST: gi|55440809|gb|CV733716.1|CV733716
genomic: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAGgtagtctcct ... tccactgcagATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGC
EST: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG ATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGTEST: gi|163925538|gb|EG713379.1|EG713379
genomic: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAGgtagtctcct ... tccactgcagATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGC
EST: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG ATTATTTCGAGAATTCGAAGAEST: gi|218498120|gb|FG965520.1|FG965520
genomic: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAGgtagtctcct ... tccactgcagATTATTTCGAGAATTCGAAGA
EST: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG ATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATGGC
genomic: GGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAGgtagtctcct ... tccactgcagATTATTTCGAGAATTCGAAGAGCATGATTTCGCCAGGACAGGAAGTATTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAGgtagtctcctcatccaatggcttgcactttatacttatacatgatgactgcctatgcttgatatgagctttttttttgccatatattccactgcag
- - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - GAGATG