1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTAAAGGATTTTTCTAACAAAAGCGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGgtactcttgctaactcagagtctcaggcagacagtatataaatgtatatggaaatctttctgtttatggaattttgatttgattaaaatccctgtgttgc...
species | Oryza sativa |
transcript | LOC_Os12g01170.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTAGATGTTCTTGAAGGATATCTCAAATATGAG AATTTGTCTCAAACCAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCEST: gi|29678194|gb|CB674469.1|CB674469
genomic: CTAGATGTTCTTGAAGGATATCTCAAATATGAGgtactcttgc ... cattgagcagAATTTGTCTCAAA-CAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTC
EST: AAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAG AATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCCEST: gi|58693613|gb|CK082300.1|CK082300
genomic: AAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGgtactcttgc ... cattgagcagAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCC
EST: AAAGTGGTCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAG AATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCCEST: gi|66914385|gb|CX101233.1|CX101233
genomic: AAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGgtactcttgc ... cattgagcagAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCC
EST: AAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAG AATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCCEST: gi|56158380|gb|AU070393.2|AU070393
genomic: AAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGgtactcttgc ... cattgagcagAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCC
EST: AAAGTGGTCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAG AATTTGTCTCAAACAAGGATGGCTGGTEST: gi|25797835|gb|CA753796.1|CA753796
genomic: AAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGgtactcttgc ... cattgagcagAATTTGTCTCAAACAAGGATGGCTGGT
EST: AAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAG AATTTGTCTCANACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCCEST: gi|86261453|gb|CI017195.1|CI017195
genomic: AAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGgtactcttgc ... cattgagcagAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCC
EST: TGAAGGATATCTCAAATATGAG AATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCCEST: gi|29678195|gb|CB674470.1|CB674470
genomic: TGAAGGATATCTCAAATATGAGgtactcttgc ... cattgagcagAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCC
EST: AAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAG AATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCCEST: gi|58685986|gb|CK074673.1|CK074673
genomic: AAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGgtactcttgc ... cattgagcagAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCC
EST: AAAGTGGTCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAG AATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCC
genomic: AAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGgtactcttgc ... cattgagcagAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATAATCAATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAAAGGATTTTTCTAACAAAAGCGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGgtactcttgctaactcagagtctcaggcagacagtatataaatgtatatggaaatctttctgtttatggaattttgatttgattaaaatccctgtgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG