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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCCTCTGGGAGGCCTTGCTGACAGTACTGCAATATGGACTGCTTCTGCTTCATGCATATGCGCAGGATAAGCGCTGGCCATATGTGTCAATCCCTTTgtatggtcctaatcccttaaataatcgttccttttatctaatctttcctgtggccatgtacaaattaaggatgcactttcctgatgcttctagttttatttgctgaaaacag

Basic information

species Oryza sativa
transcript LOC_Os11g43860.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g43860.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G037831_T02 (Zea mays), 5'ss of exon 3
TCACCCTCTGGGAGGCCTTGCTGACAGTACTGCAATATGGACTGCTTCTGCTTCATGCATATGCGCAGGATAAGCGCTGGCCATATGTGTCAATCCCTTTgtatggtcctaatcccttaaataat-cgttccttttatctaatctttcctgtggccatgtacaaattaaggatgcactttcctgatgcttctagttttatttgctgaaaacag
|||||||||||||||| | ||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||| || ||||||| |||||  ||||| ||||| | |||| || ||| ||  ||| | ||  | || |  || |||  ||      ||||     || |  | |       ||| ||||||   | | |   | |        
TCACCCTCTGGGAGGCATAGCTGACAGTCCTGCAGTATGGGCTGCTTCTGCTCCATGCGTATGCGCAGGATAAACGGTGGCCATTTGTGTTGATCCCATTgtacgatcctgattcctgaatgaatgcctttttcttttgcaaacttatct-catttatgttttcttttacaaagt------ctgctgcttcctctatcaggcgattg------

upper sequence: LOC_Os11g43860.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G126601_T01 (Zea mays), 5'ss of exon 4
TCACCCTCTGGGAGGCCTTGCTGACAGTACTGCAATATGGACTGCTTCTGCTTCATGCATATGCGCAGGATAAGCGCTGGCCATATGTGTCAATCCCTTTgtatggtcctaatcccttaaataat--cgttccttttatctaatctttcctgtggccatgta--------caaattaaggatgcactttc-----------ctgatgcttctagttttatttgctgaaaacag
|||||||||||||||| | ||||||||| ||||| ||||| |||||||| || ||||| |||||||||||||| || || |||| |||||| ||||| ||||| | |||  || ||| ||  |||  | ||   |||  | ||  | ||   ||| |||||         || |  |||| ||    |             || ||| || | |||  || |||||  | |||
TCACCCTCTGGGAGGCATCGCTGACAGTCCTGCAGTATGGGCTGCTTCTACTCCATGCGTATGCGCAGGATAAACGATGTCCATTTGTGTCGATCCCGTTgtacgatcccgattcctgaatgaatgcctttttcttttgcaaacttatctcatggtcatgtgtgctccaccagaagaaggttgggtgtatgtatgtagtagcttatgtttttggttcaatctgctgcgatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33381322|gb|CF196665.1|CF196665
EST:     CTTCATGCATATGCGCAGGATAAGCGCTGGCCATATGTGTCAATCCCTTT                         GGCAAGAGGTGAGAGACCTGAAGATTGGGTTCCGGCGGAAGATGCTTCAGT
genomic: CTTCATGCATATGCGCAGGATAAGCGCTGGCCATATGTGTCAATCCCTTTgtatggtcct ... ctgaaaacagGGCAAGAGGTGAGAGACCTGAAGATTGGGTTCCGGCGGAAGATGCTTCAGT