1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtatttcaatactatagtattataatatatataaattctaatattttgcttttcctcttaacattttccaacattttcttatgatcctacattaccag
species | Oryza sativa |
transcript | LOC_Os11g40510.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAEST: gi|86897973|gb|CI290697.1|CI290697
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAEST: gi|87012285|gb|CI293335.1|CI293335
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAEST: gi|58602505|gb|CK013033.1|CK013033
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAEST: gi|58681227|gb|CK069914.1|CK069914
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAAGTGGGCATATGCAAGTACTCAAAGAGAEST: gi|88321854|gb|CI672999.1|CI672999
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAEST: gi|58678674|gb|CK067361.1|CK067361
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAEST: gi|58690866|gb|CK079553.1|CK079553
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAEST: gi|87022688|gb|CI293578.1|CI293578
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAEST: gi|58694246|gb|CK082933.1|CK082933
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAEST: gi|25797088|gb|CA753049.1|CA753049
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCATTTAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAEST: gi|58606512|gb|CK034545.1|CK034545
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: TTGCAA-TGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGAEST: gi|58666336|gb|CK055022.1|CK055022
genomic: TTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACTCAAAGAGA
EST: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT GTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACT
genomic: GACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtattt ... acattaccagGTTTGGCCAGCCAATAAAAGTCAATTGGGCATATGCAAGTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATTgtaagtatttcaatactatagtattataatatatataaattctaatattttgcttttcctcttaacattttccaacattttcttatgatcctacattaccag
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