Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGGTGCATGGAATAGATGTTTAAACCATCTGCTCACACTTGCGGAATCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattcttcggttgcatccgcatttctatatttccccacttgcactgttctaccatcttgcttgcttatgttacactgtctatgaaccacatcaaatgaggtgatgtaatcatggtgcatatatgcag

Basic information

species Oryza sativa
transcript LOC_Os11g39220.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g39220.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G419782_T02 (Zea mays), 5'ss of exon 6
GATTTGGTGCATGGAATAGATGTTTAAACCATCTGCTCACACTTGCGGAATCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattcttcggttgcatccgcatttctatatttccccacttgcactgttctaccatcttgcttgcttatgttacactgtctatgaaccacatcaaatgaggtgatgtaatcatggtgcatatatgcag
| || ||||| |||||||||||| | ||||||||||| || || || ||||||||||| ||||||||||| ||||| ||||| || ||| |||| ||||||||||||||||   ||  | |   || |   | | |      || | | ||      |  ||     | | |  ||     |  |||   |    |||  |||   ||                      
GTTTCGGTGCGTGGAATAGATGTCTGAACCATCTGCTTACGCTCGCAGAATCACACATCGAGTCTGTCATCCTTGCAAAGTTCATTGAATCGGTGAAAAGgtaaattcttcaaatgagttc---ttgcaccagtgctttgaatgaattatt------ttctgaaacatcaagccacgaaaccactgagatagtaaaaaccagggagtgc---------------------

upper sequence: LOC_Os11g39220.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G099666_T01 (Zea mays), 5'ss of exon 5
GATTTGGTGCATGGAATAGATGTTTAAACCATCTGCTCACACTTGCGGAATCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattcttcggttgcatccgcatttctatatttccccacttgcactgttctaccatcttgcttgcttatgttacactgtctatgaaccacatcaaatgaggtgatgtaatcatggtgcatatatgcag
| || ||||| |||||||||||| | ||||||||||| || ||||||||||||||||| ||||| ||||| ||||| ||||| || ||| |||| |||||||||| ||||| | ||     |  ||  |  |   |    |||  | |||| |    | |||  |  | | |  ||        ||||  |    |||  |||   ||                      
GTTTCGGTGCGTGGAATAGATGTCTGAACCATCTGCTTACGCTTGCGGAATCACACATCGAGTCCGTCATCCTTGCAAAGTTCATTGAATCGGTGAAAAGgtaaactcttcagatg-----gagttcttgca--ccagtgcttcgaatgtttt-tttttttgaatcatcaagccacgaaactactgaaatagcagaaaccagggagtg----------------------

upper sequence: LOC_Os11g39220.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G820287_T02 (Zea mays), 5'ss of exon 6
---GATTTGGTGCATGGAATAGATGTTTAAACCATCTGCTCACACTTGCGGAATCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattcttcggttgcatccgcatttctatatttccccacttgcactgttctaccatcttgcttgcttatgttacactgtctatgaaccacatcaaatgaggtgatgtaatcatggtgcatatatgcag
   | || ||||| |||||||||||| | ||||||||||| || ||    ||||||||||| ||||||||||| ||||| ||||| || ||| |||| ||||||||||||||||   ||  | |   || |   | | |      || | | ||      |  ||     | | |  ||     |  |||   |    |||  |||   ||                      
GAGGTTTCGGTGCGTGGAATAGATGTCTGAACCATCTGCTTACGCT---AGAATCACACATCGAGTCTGTCATCCTTGCAAAGTTCATTGAATCGGTGAAAAGgtaaattcttcaaatgagttc---ttgcaccagtgctttgaatgaattctt------ttctgaaacatcaagccacgaaaccactgagatagtaaaaaccagggagtgc---------------------

upper sequence: LOC_Os11g39220.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA05G31390.1 (Glycine max), 5'ss of exon 5
GATTTGGTGCATGGAATAGATGTTTAAACCATCTGCTCACACTTGCGGAATCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattcttcggttgcatccgcatttctatatttcccc-acttgcactgttctaccatcttgcttgcttatg--ttacactgtctatgaaccacatcaaatgaggtgatgtaatcatggtgcatatatgcag
  ||||||||||||||||||||||| || || ||  | |||||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| ||  | ||||   | ||| | |   | ||    |    ||| |||   | |||| |  || |   || ||      || |   ||    | | ||||  |||                                       
ATTTTGGTGCATGGAATAGATGTTTGAATCACCTTTTGACACTTGCAGAGTCACATATTGAGTCAGTCATCCTTGCTAAATTTATTGAAGCCGTGCAGAGgtgcttccttagttcctagcccttgtgtattatctcctttatttgctcaattttgt-attttatccaattttaacttgacttatatatgcgccag--------------------------------------

upper sequence: LOC_Os11g39220.2 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv00s0662g00010.t01 (Vitis vinifera), 5'ss of exon 5
GATTTGGTGCATGGAATAGATGTTTAAACCATCTGCTCACACTTGCGGAATCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattcttcggttgcatccgcatttctatatttccccacttgcactgttctaccatcttgcttgcttatgttacactgtctatgaaccacatcaaatgaggtgatgtaatcatggtgcatatatgcag
| ||||| || |||||||||||||| || || || || || ||||| || || || ||||| |||||||| ||||| |||||||| ||||| ||  | |||||  | |||   ||           |||| | |||     || |  |||||| | |   |   ||    |||     |||   || ||||                                       
GCTTTGGGGCTTGGAATAGATGTTTGAATCACCTTCTGACTCTTGCAGAGTCCCATATTGAATCTGTCATCCTTGCAAAGTTTATTGAAGCTGTACAGAGgtacttccttttctta-------gcctctaaacttc-----tttccatgttctcctaagcttaatgag-gtgtggtgttgttcttgcaccag--------------------------------------

upper sequence: LOC_Os11g39220.2 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ07036 (Selaginella moellendorffii), 5'ss of exon 5
GATTTGGTGCATGGAATAGATGTTTAAACCATCTGCTCACACTTGCGGAATCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattcttcggttgcatccgcatttctatatttccccacttgcactgttctaccatcttgcttgcttatgttacactgtctatgaaccacatcaaatgaggtgatgtaatcatggtgcatatatgcag
| ||||||||||||||| | || || ||||| || ||||| || || || ||||| ||||| || ||||||||||| ||||| || ||||| |||||  ||||| || |||    |  |   | | || |  | |      || |  |||  | |                                                                           
GCTTTGGTGCATGGAATCGCTGCTTGAACCACCTCCTCACTCTGGCCGAGTCACATATTGAATCCGTCATTCTTGCAAAGTTCATTGAAGCTGTCAACCGgtaagttgttctcccgttt---cgtctccaggtatgaaagttttcg-tgtgttgcag-------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86256651|gb|CI061414.1|CI061414
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|58693190|gb|CK081877.1|CK081877
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|9865504|gb|AU101254.1|AU101254
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|86436185|gb|CI117907.1|CI117907
EST:     TCACACCTTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCCAAAG                         ATGCCCGGATGAAAAAACCCGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|88227777|gb|CI227257.1|CI227257
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29685887|gb|CB682162.1|CB682162
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29639954|gb|CB644963.1|CB644963
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGCCCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|86539202|gb|CI179408.1|CI179408
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|88342477|gb|CI645999.1|CI645999
EST:     GTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: GTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|87019925|gb|CI299323.1|CI299323
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|218487621|gb|FG950218.1|FG950218
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29678644|gb|CB674919.1|CB674919
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29678051|gb|CB674326.1|CB674326
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|86522635|gb|CI162841.1|CI162841
EST:     TGCGAAGTTCATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29645622|gb|CB650629.1|CB650629
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29633508|gb|CB638517.1|CB638517
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29642868|gb|CB647875.1|CB647875
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|88830894|gb|CI079328.1|CI079328
EST:     AGTCTGTCATTCTTGCGAAGTTAATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: AGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29626585|gb|CB631596.1|CB631596
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29680960|gb|CB677235.1|CB677235
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29669185|gb|CB665460.1|CB665460
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|89188395|gb|CI115644.1|CI115644
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCCAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29642215|gb|CB647222.1|CB647222
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29662988|gb|CB659263.1|CB659263
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|42591851|gb|CK738337.1|CK738337
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29676319|gb|CB672594.1|CB672594
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29641783|gb|CB646790.1|CB646790
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|88216181|gb|CI216030.1|CI216030
EST:     TAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29631514|gb|CB636523.1|CB636523
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29624634|gb|CB629645.1|CB629645
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGCCCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29668162|gb|CB664437.1|CB664437
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
EST: gi|29684386|gb|CB680661.1|CB680661
EST:     TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAG                         ATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA
genomic: TCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattctt ... atatatgcagATGCCCGGATGAAAAAACACGGGAATTGTTGAAATTGGTGTGCGACCTTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTTGGTGCATGGAATAGATGTTTAAACCATCTGCTCACACTTGCGGAATCACACATTGAGTCTGTCATTCTTGCGAAGTTTATAGAAGCGGTCAAAAGgtaaattcttcggttgcatccgcatttctatatttccccacttgcactgttctaccatcttgcttgcttatgttacactgtctatgaaccacatcaaatgaggtgatgtaatcatggtgcatatatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC