1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCACTCTTGAACGAGAAATTGGACTTGATGAAGTTCCCCCATCAATGAACTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAAgttagttgatttaactgctcctaaagttattcagggggaagtcatacccaattagtttaaagcttgaagtccacattagaaattcattcatgtcagtaaa...
species | Oryza sativa |
transcript | LOC_Os11g37130.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAA GCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCAEST: gi|313080741|gb|HO213538.1|HO213538
genomic: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAAgttagttgat ... aacacaaaagGCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCA
EST: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAA GCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGCGAAGAACTCATCAEST: gi|88594632|gb|CI714590.1|CI714590
genomic: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAAgttagttgat ... aacacaaaagGCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCA
EST: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAA GCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCAEST: gi|29663432|gb|CB659707.1|CB659707
genomic: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAAgttagttgat ... aacacaaaagGCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCA
EST: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAA GCTCGGATGATAAGCCTGAGGCTGCCCCTTACACCAGTGAAGAACTCATCAEST: gi|88691337|gb|CI733921.1|CI733921
genomic: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAAgttagttgat ... aacacaaaagGCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCA
EST: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAA GCTCGGATGATAAGCCTGAGGCTGCACCTTANACCAGTGAAGAACTCATCAEST: gi|88594536|gb|CI714494.1|CI714494
genomic: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAAgttagttgat ... aacacaaaagGCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCA
EST: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAA GCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCAEST: gi|29656570|gb|CB652845.1|CB652845
genomic: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAAgttagttgat ... aacacaaaagGCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCA
EST: CTACAGGCCCCCGCCCATGAATAATAGTCAGCAACCTGCTATTGACCAAA GCTCGGATGATAAGCCTGAGGCTGCCCCTTACCCCAGTGAAGAACTCATCAEST: gi|88593428|gb|CI713382.1|CI713382
genomic: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAAgttagttgat ... aacacaaaagGCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCA
EST: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAA GCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCAEST: gi|88689432|gb|CI733008.1|CI733008
genomic: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAAgttagttgat ... aacacaaaagGCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCA
EST: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAA GCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCA
genomic: CTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAAgttagttgat ... aacacaaaagGCTCGGATGATAAGCCTGAGGCTGCACCTTACACCAGTGAAGAACTCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCACTCTTGAACGAGAAATTGGACTTGATGAAGTTCCCCCATCAATGAACTACAGGCCCCCGACCATGAATAATAGTCAGCAACCTGCTATTGACCAAAgttagttgatttaactgctcctaaagttattcagggggaagtcatacccaattagtttaaagcttgaagtccacattagaaattcattcatgtcagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggaag