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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcctcgagatcaattcatttcgtttatcctatccaatgagtaaaacttagtatcatgcttatacttgacttgttagataaagttgtaatttgta...

Basic information

species Oryza sativa
transcript LOC_Os11g28300.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g28300.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G151863_T04 (Zea mays), 5'ss of exon 3
-ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcctcgagatcaattcatttcgtttatcctatccaatgagtaaaacttagtatcatgcttatacttgacttgttagataaagttgtaatttgta-----
 ||||||||||| || || || ||||| ||||| ||||| |||||||||||||||||||| ||  |||||||||| ||||| ||||| || |||||||| |||||||  |  |   |  || || ||   |||    |||  |   | |  |     |  ||||  | | |  ||||| |||     |||| || ||  |     
GATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagctatttaattgctctttatctc---tattaattcctgttgcttatgcgctacacaatgc--aaaatcaacttgatagtatctgttgcaagttagaattaa

upper sequence: LOC_Os11g28300.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G151863_T01 (Zea mays), 5'ss of exon 4
ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcctcgagatcaattcatttcgtttatcctatccaatgagtaaaacttagtatcatgcttatacttgacttgttagataaagttgtaatttgta-----
||||||||||| || || || ||||| ||||| ||||| |||||||||||||||||||| ||  |||||||||| ||||| ||||| || |||||||| |||||||  |  |   |  || || ||   |||    |||  |   | |  |     |  ||||  | | |  ||||| |||     |||| || ||  |     
ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagctatttaattgctctttatctc---tattaattcctgttgcttatgcgctacacaatgc--aaaatcaacttgatagtatctgttgcaagttagaattaa

upper sequence: LOC_Os11g28300.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv04s0023g00380.t01 (Vitis vinifera), 5'ss of exon 4
ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACGgtgagctcctcgagatcaattcatttcgtttatcctatccaatgagtaaaacttagtatcatgcttatacttgacttgttaga-taaagttgtaatttgta----
|||||||||||||| ||||| || || || || ||||||||| | ||||| || ||||| ||| | |||||||||||    ||  |    || |||||||| ||||       ||    |  |||  |||  | ||    |   |||    || ||     |  | | ||  | |||||    | | |    |||         
ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTAAATCAATTGTTTTATCTGGTGCGCTCAGTGCTTTGATTGTAATGACGgtaagctatct---attttcttgttt-attttccatacaagagctgtacctttttgtgcttcggcttt-ctccatttgttcttctgatgccccaatgcacgtgtg