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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGTTGGTAATATAGTATGGATTCGAGAAAATGAGGAAGTACCATGTGACCTTGTTCTGATAGGAACTTCCGACTCGCAAGGCATTTGCCATGTTGAGgtaagacatgaatgaatagactaaaaatgtttaacccctacatttgttgcatgactgatatcaagtgaacacctatttttcttcaaactaagaattttct...

Basic information

species Oryza sativa
transcript LOC_Os11g25980.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g25980.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G865163_T01 (Zea mays), 5'ss of exon 3
TCGTGTTGGTAATATAGTATGGATTCGAGAAAATGAGGAAGTACCATGTGACCTTGTTCTGATAGGAACTTCCGACTCGCAAGGCATTTGCCATGTTGAGgtaagacatgaatgaatagactaaaaatgtttaacccctacatttgttgcatgactgatatcaagtgaacacctatttttcttcaaactaagaattttct-
 ||||| ||||| ||||| ||||||||||| ||||| |||||||||||||| |||||| || | |||||||| ||  | |||||||| || |||||||||||||   |    || |    |   | |  ||    |  |   | |  ||| ||  |    ||| |  |  || |   | | ||     |  |  |||| | 
CCGTGTCGGTAACATAGTTTGGATTCGAGAGAATGAAGAAGTACCATGTGATCTTGTTTTGTTGGGAACTTCTGAACCACAAGGCATCTGTCATGTTGAGgtaaataaatgctgtaaccccgccacaccttctgtctgtttgtattgtgcttggtttgc-tcaggaaataactttgctgtattggccatgtggtttttttc

upper sequence: LOC_Os11g25980.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G411940_T01 (Zea mays), 5'ss of exon 6
TCGTGTTGGTAATATAGTATGGATTCGAGAAAATGAGGAAGTACCATGTGACCTTGTTCTGATAGGAACTTCCGACTCGCAAGGCATTTGCCATGTTGAGgtaagacatgaatgaatagactaaaaatgtttaacccctacatttgttgcatgactgatatcaagtgaacacctatttttctt--caaactaagaattttct
 ||||| ||||| ||||| ||||||||||| ||||| |||||||||||||| |||||| || | |||||||| ||  | |||||||| || |||||||||||||   |    || |    |   | |  ||    |  |   | |  ||| ||  |    ||| |  |  || |   | | ||  | |  |  |   |||| 
CCGTGTCGGTAACATAGTTTGGATTCGAGAGAATGAAGAAGTACCATGTGATCTTGTTTTGTTGGGAACTTCTGAACCACAAGGCATCTGTCATGTTGAGgtaaataaatgctgtaaccccgccacaccttctgtctgtttgtattgtgcttggtttgc-tcaggaaataactttgctgtattggccatgtggggcatttc-

upper sequence: LOC_Os11g25980.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA13G37090.1 (Glycine max), 5'ss of exon 3
TCGTGTTGGTAATATAGTATGGATTCGAGAAAATGAGGAAGTACCATGTGACCTTGTTCTGATAGGAACTTCCGACTCGCAAGGCATTTGCCATGTTGAGgtaag-acatgaatgaatagactaaaaatgtttaacccctacatttgttgcatgactgatatcaagtgaacacctatttttcttcaaactaagaattttct
|| ||| ||||||||||||||| | || |||||||| ||||| || |||||||||||| |||| || || || ||  | |||||  ||||| || | |||||||  |  |     || |  |||||| || |   |  ||   | ||  |                                                   
TCATGTAGGTAATATAGTATGGCTACGTGAAAATGATGAAGTGCCTTGTGACCTTGTTTTGATTGGCACCTCTGATCCTCAAGGAGTTTGCTATATAGAGgtaattatgtcgtgaaacatgctaaaactggt---cttctctctctgcag---------------------------------------------------