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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGCCAGGTGGGCGATGCTCGGCGCCGCTGGGTTCATCATCCCCGAGGCCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtactagccactgatcatcggcaattcagctaattcgctgatcactcaagctcaatacctgaatctctgaactgaagtgaactcactcatggtatatgcag

Basic information

species Oryza sativa
transcript LOC_Os11g13890.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g13890.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G149428_T01 (Zea mays), 5'ss of exon 4
CCATGCCAGGTGGGCGATGCTCGGCGCCGCTGGGTTCATCATCCCCGAGGCCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgc-gtgtactagccactgatcatcggcaattca-gctaattcgctgatcactcaagctcaatacctgaatctctgaactgaagtgaactcactcatggtatatgcag-------------------------------------------------------------
||||||||| ||||| |||||||| ||||||||     ||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| | |  |   | || | |||| || | |   ||   || |||  |      |||   | |  |  | |   | |  |    |||      |  ||  ||||    |                                                              
CCATGCCAGATGGGCCATGCTCGGTGCCGCTGGCGCTGTCATCCCAGAGGCGTGCAACAAGTTCGGCGCTAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtcctgcatgtcatcc-cagatc-tcagaatcacatagtacttcaatagcatttcattttaacaaattaaggttttacatgttagttgctagatgcaaagtatcaatatctgactctgagagtttgaactcaaagttcacggatggtgtctgtcacctgaatgcatgcag

upper sequence: LOC_Os11g13890.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA09G28200.1 (Glycine max), 5'ss of exon 5
CCATGCCAGGTGGGCGATGCTCGGCGCCGCTGGGTTCATCATCCCCGAGGCCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgt--gcgtgtactagccactg-atcatcggcaattcagctaattcgctgatcactcaagctcaatacctgaatctctgaactgaagtgaactcactcatggtatatgcag
 |||||||| ||||| ||||| || || ||||| |||||||| || ||||||| |||||| | ||| |||||||| || || || || || |||||||||||  ||  |   ||   | |  | ||||   || |  |    |    || |||||  |   || ||  |   |    | ||| ||   |    | |||   |        
TCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCAAACTGTGGTCCAGAAGCTGTTTGGTTCAAGgtttgcaagctttataaattataacatcaagaaatgtgactgtgtcttgttcact--aatacattattttttttatggcactcaacgaatgaaattcaatat--------

upper sequence: LOC_Os11g13890.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA16G33030.1 (Glycine max), 5'ss of exon 4
CCATGCCAGGTGGGCGATGCTCGGCGCCGCTGGGTTCATCATCCCCGAGGCCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtactagccactgatcatcggcaattca-gctaattcgctgatcactcaagctcaatacctgaatctctgaactgaagtgaactcactcatggtatatgcag
 || ||||| ||||| ||||| || || ||||| |||||||| |||||||||| |||||| | ||| ||||||||||| || ||||| || |||||||||||  |    ||    |   |   ||      ||| | | | |     || | |        | ||   |       || | ||  || || ||   || |        
TCACGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCCGAGGCCTTCAACAAATATGGAGCAAACTGCGGTCCTGAGGCTGTTTGGTTCAAGgtttgcaagctttataacaactttcactgtgtcaagttcactaatacattatttttttatgacactcaacaaatgaaattcaatagatcttacaagtgct--------

upper sequence: LOC_Os11g13890.2 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv18s0089g01170.t01 (Vitis vinifera), 5'ss of exon 5
CCATGCCAGGTGGGCGATGCTCGGCGCCGCTGGGTTCATCATCCCCGAGGCCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtactagccactgatcatcggcaattcagctaattcgctgatcactcaagctcaatacctgaatctctgaactgaagtgaactcactcatggtatatgcag
||| ||| ||||||| ||||||||||| ||||| ||||||||||| ||||||| |||||| || || || ||||||||||| || || || |||||||||||  |  | ||   |     |  ||   |||||  | ||     |   ||| |   |     |  || |   |   |   | | ||| ||    | || |       
CCACGCCCGGTGGGCTATGCTCGGCGCAGCTGGCTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAAGCTGTGTGGTTCAAGgtttgcttccttaacttcccttttcca-aattcctcaaaaaatttatccaccctttccttggatttgtactcccacaagaaggggaattcgaggaaggcag------

upper sequence: LOC_Os11g13890.2 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ11555 (Selaginella moellendorffii), 5'ss of exon 4
CCATGCCAGGTGGGCGATGCTCGGCGCCGCTGGGTTCATCATCCCCGAGGCCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtactagccactgatcatcggcaattcagctaattcgctgatcactcaagctcaatacctgaatctctgaactgaagtgaactcactcatggtatatgcag
 || ||  | ||||||||||||||||| ||||| ||  | || |||||||| | |||||||||||| ||| | || ||||||||||| || |||||||||||   ||| ||||| |    || |||  |  |    ||  ||  || |   | |  ||| |                                              
TCACGCTCGATGGGCGATGCTCGGCGCTGCTGGATTTGTTATTCCCGAGGCTTTCAACAAGTTTGGAGCACAGTGTGGCCCCGAGGCAGTGTGGTTCAAGgtt--tgttctagcaaactttc-tcgagagctt--ttagatctttgctt--ttatcctctag---------------------------------------------

upper sequence: LOC_Os11g13890.2 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ18942 (Selaginella moellendorffii), 5'ss of exon 4
CCATGCCAGGTGGGCGATGCTCGGCGCCGCTGGGTTCATCATCCCCGAGGCCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtactagccactgatcatcggcaattcagctaattcgctgatcactcaagctcaatacctgaatctctgaactgaagtgaactcactcatggtatatgcag
||| ||  | ||||||||||||||||| ||||| ||  | || |||||||| | |||||||||||| ||| | || ||||||||||| || |||||||||||   ||| ||||| |    || |||  |  |    ||  ||  || |   | |  ||| |                                              
CCACGCTCGATGGGCGATGCTCGGCGCTGCTGGATTTGTTATTCCCGAGGCTTTCAACAAGTTTGGAGCACAGTGTGGCCCCGAGGCAGTGTGGTTCAAGgtt--tgttctagcaaactttc-tcgagagctt--ttagatctttgctt--ttatcctctag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38477125|gb|CF961258.1|CF961258
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACAACCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38469920|gb|CF954051.1|CF954051
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|58605675|gb|CK033708.1|CK033708
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCATG                         AGCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33814084|gb|CF332924.1|CF332924
EST:     CTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGG-CCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|29688979|gb|CB685254.1|CB685254
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38480513|gb|CF964602.1|CF964602
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCACGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACG
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACG
EST: gi|38469678|gb|CF953809.1|CF953809
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33661685|gb|CF292652.1|CF292652
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38469690|gb|CF953821.1|CF953821
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33380989|gb|CF196332.1|CF196332
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|29687470|gb|CB683745.1|CB683745
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33661716|gb|CF292683.1|CF292683
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|58680928|gb|CK069615.1|CK069615
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|86907165|gb|CI292786.1|CI292786
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACG
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACG
EST: gi|38473011|gb|CF957143.1|CF957143
EST:     CCTGCAACAAGTTTGGCGCANACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTC
EST: gi|29612969|gb|CB617982.1|CB617982
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38471038|gb|CF955169.1|CF955169
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38472458|gb|CF956589.1|CF956589
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38473838|gb|CF957970.1|CF957970
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33677124|gb|CF305363.1|CF305363
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33662515|gb|CF293482.1|CF293482
EST:     CTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGG-CCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38468561|gb|CF952692.1|CF952692
EST:     CCTGCAACAAGTTTGGCGCANACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAAC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAAC
EST: gi|38469914|gb|CF954045.1|CF954045
EST:     CCTGCAACAAGTTTGGCGCANACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|50878557|gb|AF527718.1|AF527718
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ANCGGCGCCCTC-TC-TGGACGG
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGG
EST: gi|33662548|gb|CF293515.1|CF293515
EST:     CTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGG-CCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38471734|gb|CF955865.1|CF955865
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGG
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGG
EST: gi|33664946|gb|CF295913.1|CF295913
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33818533|gb|CF335097.1|CF335097
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33662300|gb|CF293267.1|CF293267
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|29687152|gb|CB683427.1|CB683427
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38474163|gb|CF958295.1|CF958295
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33813814|gb|CF332793.1|CF332793
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38474779|gb|CF958912.1|CF958912
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|58686015|gb|CK074702.1|CK074702
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCT
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCT
EST: gi|88324101|gb|CI563712.1|CI563712
EST:     CCTGCAACAAGTTTGGCGCANACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTTCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33660623|gb|CF291590.1|CF291590
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38565674|gb|CK085127.1|CK085127
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|38473969|gb|CF958101.1|CF958101
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|58610981|gb|CK038693.1|CK038693
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33663614|gb|CF294581.1|CF294581
EST:     CCTGCAACAAGGTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|33797561|gb|CF324640.1|CF324640
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
EST: gi|58609836|gb|CK037869.1|CK037869
EST:     CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAG                         ACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC
genomic: CCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 447

CCATGCCAGGTGGGCGATGCTCGGCGCCGCTGGGTTCATCATCCCCGAGGCCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGgtgcgtgtac ... gtatatgcagACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGCATCCCCATCAACCTCATCGTCGCCGTCGCCGCCGAGGTCGTCCTCGTCG




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