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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTGTGCTTCTGAGTCAGTTGTCACATCCAAATATTGTGCAGTACTATGGCAGTGATCTGgtaaatatagaactcatgatgattttatgatcttgtcttgagcatgtagttgcatcataagttaaacgaagacatacaatcattcaatcattacgaactc...

Basic information

species Oryza sativa
transcript LOC_Os11g10100.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|109974299|gb|DT806830.1|DT806830
EST:     GTACTATGGCAGTGATCTG                         TCTAGTGAGACGCTTTCAGTCTATCTCGAGTATGTTTCTGGGGGCTCTATC
genomic: GTACTATGGCAGTGATCTGgtaaatatag ... ttcaatacagTCTAGTGAGACGCTTTCAGTCTATCTCGAGTATGTTTCTGGGGGCTCTATC
EST: gi|29680776|gb|CB677051.1|CB677051
EST:     TGAGTCAGTTGTCACATCCAAATATTGTGCAGTACTATGGCAGTGATCTG                         TCTAGTGAGACGCTTTCAGTCTATCTCGAGTATGTTTCTGGGGGCTCTATC
genomic: TGAGTCAGTTGTCACATCCAAATATTGTGCAGTACTATGGCAGTGATCTGgtaaatatag ... ttcaatacagTCTAGTGAGACGCTTTCAGTCTATCTCGAGTATGTTTCTGGGGGCTCTATC