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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTTGTGTAGTTGGATCTATCACAATTGTACTCCATGCTCCACAGGAGCGCAACATCGATTCTGTAAGGGAAGTTTGGGATCTTGCAACTGAACCAGgtatttactgtattaaaatatgttcataacatagccctcagcagccttactgtaagttccacgggctagactgaatgtctgattcattattgttttccctttgtttccag

Basic information

species Oryza sativa
transcript LOC_Os11g09140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g09140.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G129268_T01 (Zea mays), 5'ss of exon 4
GTTCTTTGTGTAGTTGGATCTATCACAATTGTACTCCATGCTCCACAGGAGCGCAACATCGATTCTGTAAGGGAAGTTTGGGATCTTGCAACTGAACCAGgtatttactgt--------------------------------------attaaaatatgttcataacatagccctcagcagccttactgtaagttccacgggctagactgaatgtctgattcattattgttttccctttgtttccag
||||| ||||| |||||||||||||||||||| |||||||| ||||| |||||  |||| |||||||||| |||||||||||||||||||||||||||||||||||||| |                                      |   | |    || | | |||    |       | ||  |  || | | |   |||||| |  ||   | |||  ||||   || || | | ||| |||
GTTCTCTGTGTTGTTGGATCTATCACAATTGTGCTCCATGCCCCACAAGAGCGTGACATTGATTCTGTAAAGGAAGTTTGGGATCTTGCAACTGAACCAGgtatttactattgttttttttgaagcaggtatttagtatactgagtactaccgagactgattaacatcattattcattatgactttgttacaattccaataagctagatt--attcttaattacttatcagtt-ccttgtattttcag

upper sequence: LOC_Os11g09140.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G104147_T03 (Zea mays), 5'ss of exon 4
GTTCTTTGTGTAGTTGGATCTATCACAATTGTACTCCATGCTCCACAGGAGCGCAACATCGATTCTGTAAGGGAAGTTTGGGATCTTGCAACTGAACCAGgtatttactgtattaaaatatgttcataacatagccctcagcagccttactg--taagttc--cacgggctagactgaat--------gtctgattcatta-ttgttt------tccctttgtttccag
||||| ||||| || ||||| ||||||||||| |||||||||||||| |||||  |||| |||||||||| |||||||||||||||||| ||||||||||||||||  | | |  ||| | ||   ||  |||      |  | |   | ||  |||  ||   |||   | |    |||          | |||| |||| || |||      ||| | | ||| |||
GTTCTCTGTGTTGTCGGATCCATCACAATTGTGCTCCATGCTCCACAAGAGCGTGACATTGATTCTGTAAAGGAAGTTTGGGATCTTGCCACTGAACCAGgtatttttttt-tggaaacaggtatctagtatactgaatattaccaagattggttaacatcattacgactttgttacaattccaaagaaccagatttattaattatttaactattccttgtatttgcag

upper sequence: LOC_Os11g09140.2 (Oryza sativa), 5'ss of exon 4
lower sequence: AT1G71900.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTCTTTGTGTAGTTGGATCTATCACAATTGTACTCCATGCTCCACAGGAGCGCAACATCGATTCTGTAAGGGAAGTTTGGGATCTTGCAACTGAACCAGgtat-ttactgtattaaaatatgttcataacatagccctca---gcagccttactgtaagttccacgggctagactgaat--gtctgattcattattgttttccctttgtttccag
|   | ||||| || || || |  ||||||||  | ||||| || || || ||  | || || ||||| |  ||||||||| ||||||||||||||||||||   || ||  ||     | || |   | |     | | |          || |     |||||     |   || | |  ||||  ||  ||   |                  
GCCTTATGTGTTGTGGGTTCCACAACAATTGTCTTACATGCCCCTCAAGAACGTGAAATTGACTCTGTGATTGAAGTTTGGAATCTTGCAACTGAACCAGgtgcgttgcttgatggggctgtgatttgagccatctcatgactcatgattctatttcgccttccattcaattttctaacttcgtctagtttgttgcag------------------