ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

TCTCAAGTATGATAGCGATGCCGGCAAGAAGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacctactgttattttactatcttgtattttgagcccttctattcagttaattggatggtaaccatgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcag

Basic information

species	Oryza sativa
transcript	LOC_Os11g06750.1
intron #	4
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G801409_T04 (Zea mays), 5'ss of exon 3

TCTCAAGTATGATAGCGATGCCGGCAAGAAGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacctactgttattttacta-tcttgtat-tttgagcccttctattcagttaattggatggtaac-catgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcag
|||||| ||||| |  ||||| |||||||||||||| ||  |||||||||||||||||||||| |||||||||||| ||||||| || |  || || ||||| || | | || |  |  |||  |  || |  || ||||         | |   ||||| |  || |||  ||  | || |   |  ||| ||     ||                        
TCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagcttaattgtgctttgttgctcattcatgtttgtaggaacacagtttcttaat-gattgataatgcaattactattggtcttttatttggcttc------------------------

upper sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G132968_T02 (Zea mays), 5'ss of exon 4

TCTCAAGTATGATAGCGATGCCGGCAAGAAGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacctactgttattttacta-tcttgtat-tttgagcccttctattcagttaattggatggtaac-catgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcag
|||||| ||||| |  ||||| |||||||||||||| ||  |||||||||||||||||||||| |||||||||||| ||||||| || |  || || ||||| || | | || |  |  |||  |  || |  || ||||         | |   ||||| |  || |||  ||  | || |   |  ||| ||     ||                        
TCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagcttaattgtgctttgttgctcattcatgtttgtaggaacaaagtttcttaat-gattgataatgcaattactattggtcttttatttggcttc------------------------

upper sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G324314_T05 (Zea mays), 5'ss of exon 4

TCTCAAGTATGATAGCGATGCCGGCAAGAAGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacctactgttattttactatcttgtattttgagcccttctattcagttaattggatggtaaccatgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcag
|||||| ||||| |  ||||| |||||||||||||| ||  |||||||||||||||||||||| |||||||||||| ||||||| || |  || || ||||| || | | || |  |  |||  |  ||  | |  ||         |  |||||  ||      | |  |||   |    |||| |  || |||    |||                    
TCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagcttaattgtgctttgttg-ctcat-tcatgtttgtaggaacacagtttcttaatgattgatgatgcaattactattggtcttttatttggcttc--------------------

upper sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G135727_T03 (Zea mays), 5'ss of exon 4

TCTCAAGTATGATAGCGATGCCGGCAAGAAGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacctactgttattttacta-tcttgtat-tttgagcccttctattcagttaattggatggtaac-catgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcag
|||||| ||||| |  ||||| |||||||||||||| ||  |||||||||||||||||||||| |||||||||||| ||||||| || |  || || ||||| || | | || |  |  |||  |  || |  || ||||         | |   ||||| |  || |||  ||  | || |   |  ||| ||     ||                        
TCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagcttaattgtgctttgttgctcattcatgtttgtaggaacaaagtttcttaat-gattgataatgcaattactcttggtcttttatttggcttc------------------------

upper sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G135727_T04 (Zea mays), 5'ss of exon 4

------------------------------------------------TCTCAAGTATGATAGCGATGCCGGCAAGAAGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacctactgttattttactatcttgtattttgagcccttctattcagttaattggatggtaaccatgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcag
                                                |||||| ||||| |  ||||| |||||||||||||| ||  |||||||||||||||||||||| |||||||||||| ||||||| || |  || || ||||| || | | ||     ||| | || | |||    || |    || ||   |   | |                                                                
CTACAAGAACTGGTGCAAGAGCAAGAAGAAGGCTTTCACAAAGTATGCTCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGaagatgaagaaatatgcttctgttatccgtgtcattgctcatacccaggtaagaagctta-----attgtgctttgttgctcattca-tgtttgtaggaacaaagt----------------------------------------------------------------

upper sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G109677_T04 (Zea mays), 5'ss of exon 5

TCTCAAGTATGATAGCGATGCCGGCAAGAAGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacctactgttattttactatcttgtattttgagcccttctattcagttaattggatggtaaccatgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcag
|||||| ||||| |  ||||| |||||||||||||| ||  |||||||||||||||||||||| |||||||||||| ||||||| || |  || || ||||| || | | || |  |  |||  | | |  | |  |||        |  |||||  |||     | |   ||   |    |||| |  || |||    |||                    
TCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagcttaattgtgctttgttgt-tcat-tcatgattgtaggaacacagtttcttgatgattgatagtgcaattactattggtcttttatttggcttc--------------------

upper sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT1G43170.7 (Arabidopsis thaliana), 5'ss of exon 4

TCTCAAGTATGATAGCGATGCCGGCAAGAAGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacctactgttattttactatcttgtattttgagcccttctattcagttaattggatggtaaccatgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcag
|    ||||||| || || |  ||||||||||  || ||    ||||||||||||||||||||||| ||| ||||  |||||||  | |  ||||||||||| |||    | ||  |    |   |   | |||  | | | |||||       ||  |   |  | || ||    ||| |  | |   | ||                             
TAAGCAGTATGACAGTGAGGATGGCAAGAAGGGTATTCAGGCTCAGCTTGAGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGgtaagt---ttgcttattgaatggaagtgtatatcataaactcttctgc---actacgttcttactgacaattctatgtgacctctaattacag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|218500144|gb|FG957692.1|FG957692

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|33795571|gb|CF323655.1|CF323655

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAG
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAG

EST: gi|117216971|gb|CT845288.1|CT845288

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|58679138|gb|CK067825.1|CK067825

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|58604279|gb|CK014807.1|CK014807

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAA
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAA

EST: gi|58653344|gb|CK042024.1|CK042024

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGG
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGG

EST: gi|218489448|gb|FG954211.1|FG954211

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|58676606|gb|CK065293.1|CK065293

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGACAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|58678501|gb|CK067188.1|CK067188

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGACAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGG
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGG

EST: gi|218490273|gb|FG964408.1|FG964408

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|218482116|gb|FG962264.1|FG962264

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCGCACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|218493270|gb|FG968723.1|FG968723

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|33794277|gb|CF323026.1|CF323026

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|86907296|gb|CI292852.1|CI292852

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|218481334|gb|FG969732.1|FG969732

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAGGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|2312602|gb|C28757.1|C28757

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|29689626|gb|CB685901.1|CB685901

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|27554042|gb|CA997942.1|CA997942

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAC                         ATTATGAAAATGAACGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|58677758|gb|CK066445.1|CK066445

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|218502819|gb|FG970328.1|FG970328

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|58693843|gb|CK082530.1|CK082530

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|218494740|gb|FG970602.1|FG970602

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGGAGAT
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGG-AGAT

EST: gi|218491785|gb|FG958621.1|FG958621

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCCTGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|58687071|gb|CK075758.1|CK075758

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|58590957|gb|CF989265.1|CF989265

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

EST: gi|58677595|gb|CK066282.1|CK066282

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCAC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCAC

EST: gi|33797152|gb|CF324441.1|CF324441

EST:     AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG                         ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 74 (upstream exon), 73 (downstream exon)
Score: 251

TCTCAAGTATGATAGCGATGCCGGCAAGAAGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCCAGATCAATGGTGGTACCATTGCCGATAAGGTGGACTATGGATACAAGT

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Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTCAAGTATGATAGCGATGCCGGCAAGAAGGAAATCCAAATGCAGCTTGAGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacctactgttattttactatcttgtattttgagcccttctattcagttaattggatggtaaccatgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT