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ACGCCAAATTCTCCTGTTGCCTCAGGAAGTTCTGCAGGGAGAAAGACAAGCAAGAGGATTATCCTAGCATGTCAAGGAGCTACACAGAACAGTGCAGAGgtatatattctcatttgtgcatccatgcttgcatgaaaaaaaaagcgctttttctatggatcaaaatgtgaaagcaaagataattcactggagaaactgt...
species | Oryza sativa |
transcript | LOC_Os11g05260.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCAAGAGGATTATCCTAGCATGTCAAGGAGCTACACAGAACAGTGCAGAG ATTGGTGTCAGTGGAATGGGGTATGCACCGCTTAACATGCTTGGGATTATAEST: gi|58608221|gb|CK036254.1|CK036254
genomic: GCAAGAGGATTATCCTAGCATGTCAAGGAGCTACACAGAACAGTGCAGAGgtatatattc ... tctattacagATTGGTGTCAGTGGAATGGGGTATGCACCGCTTAACATGCTTGGGATTATA
EST: GCAAGAGGATTATCCTAGCATGTCAAGGAGCTACACAGAACAGTGCAGAG ATTGGTGTCAGTGGAATGGGGTATGCAEST: gi|8955589|gb|BE229395.1|BE229395
genomic: GCAAGAGGATTATCCTAGCATGTCAAGGAGCTACACAGAACAGTGCAGAGgtatatattc ... tctattacagATTGGTGTCAGTGGAATGGGGTATGCA
EST: GGATTATCCTAGCATGTCAAGGAGCTACACAGAACAGTGCAGAG ATTGGTGTCAGTGGAATGGGGTATGCACCGCTTAACATGCTTGGGATTATAEST: gi|29678943|gb|CB675218.1|CB675218
genomic: GGATTATCCTAGCATGTCAAGGAGCTACACAGAACAGTGCAGAGgtatatattc ... tctattacagATTGGTGTCAGTGGAATGGGGTATGCACCGCTTAACATGCTTGGGATTATA
EST: AGAACAGTGCAGAG ATTGGTGTCAGTGGAATGGGGTATGCACCGCTTAACATGCTTGGGATTATAEST: gi|58690888|gb|CK079575.1|CK079575
genomic: AGAACAGTGCAGAGgtatatattc ... tctattacagATTGGTGTCAGTGGAATGGGGTATGCACCGCTTAACATGCTTGGGATTATA
EST: GCAAGAGGATTATCCTAGCATGTCAAGGAGCTACACAGAACAGTGCAGAG ATTGGTGTCAGTGGAATGGGGTATGCACCGCTTAACATGCTTGGGATTATA
genomic: GCAAGAGGATTATCCTAGCATGTCAAGGAGCTACACAGAACAGTGCAGAGgtatatattc ... tctattacagATTGGTGTCAGTGGAATGGGGTATGCACCGCTTAACATGCTTGGGATTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCCAAATTCTCCTGTTGCCTCAGGAAGTTCTGCAGGGAGAAAGACAAGCAAGAGGATTATCCTAGCATGTCAAGGAGCTACACAGAACAGTGCAGAGgtatatattctcatttgtgcatccatgcttgcatgaaaaaaaaagcgctttttctatggatcaaaatgtgaaagcaaagataattcactggagaaactgt
- - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa