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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGATAATGTAATTGGTGAGGGTGGATATGGTGTTGTCTACCGTGGCAGATTATCAAATGGCACCCCAGTGGCTGTCAAAAAAATCCTTAACAATCTgtgagtatttttcgttttttcttataacaattctttggtgatgcagtggcagtgcattggttagtttgttgtccttccttttacttaagctatgaccacttgccttgggcag

Basic information

species Oryza sativa
transcript LOC_Os11g01740.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g01740.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G162702_T01 (Zea mays), 5'ss of exon 1
CAAAGGATAATGTAATTGGTGAGGGTGGATATGGTGTTGTCTACCGTGGCAGATTATCAAATGGCACCCCAGTGGCTGTCAAAAAAATCCTTAACAATCTgtgagtatttttcgttttttcttataacaattctttggtgatgcagtggcagtgcattggttagtttgttgtccttccttttacttaagctatgaccacttgccttgggcag
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||           ||||  | || ||||| |||  ||| ||||||||||| |||   || |    || | ||| ||||  ||||   |   |     || | || ||||
CAAAGGATAATGTAATTGGTGAGGGTGGGTATGGTGTTGTATATCGTGGCAGATTATCAAATGGCACCCCAGTTGCTGTCAAGAAAATCCTTAACAATTTgtgagc----------tttttctgtagcaattttttattgaagcagtggcagtacatgcctttgccc-ttctgctttcttt--cttacagtggaattgtctgtcatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58607362|gb|CK035395.1|CK035395
EST:     AGATTATCAAATGGCACCCCAGTGGCTGTCNNNNNNNTCCTTAACAATCT                         AGGACAAGCTGAGAGAGAATTCAGAGTGGAAGTTGAAGCAATTGGTCATGT
genomic: AGATTATCAAATGGCACCCCAGTGGCTGTCAAAAAAATCCTTAACAATCTgtgagtattt ... ccttgggcagAGGACAAGCTGAGAGAGAATTCAGAGTGGAAGTTGAAGCAATTGGTCATGT