1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGGGTAAGCATGGGTTAATTATTGAATTCACTGATCCAGACTATAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAGgtgaaaacttacttgcatctatatattgctgctgaatgctgcattttcaccttctacacatgttgtcactaagttattagttattgcaactaccacaagg...
species | Oryza sativa |
transcript | LOC_Os10g42250.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAG GATGGACACATCTAGAGACCACTTGACTCACTGATGAGGAAGGCAGGTTACEST: gi|33814579|gb|CF333154.1|CF333154
genomic: ATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAGgtgaaaactt ... tacctggcagGATGGACACATCTAGAGACCA-TTGACTCACTGATGAGGAAGGCAGGTTAC
EST: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAG GATGGACACATCTAGAGACCATTGACTCACTGATGAGGAAGGCAGGTTACAEST: gi|33680238|gb|CF308477.1|CF308477
genomic: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAGgtgaaaactt ... tacctggcagGATGGACACATCTAGAGACCATTGACTCACTGATGAGGAAGGCAGGTTACA
EST: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAG GATGGACACATCTAGAGACCATTGACTCACTGATGEST: gi|44668540|gb|CR281974.1|CR281974
genomic: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAGgtgaaaactt ... tacctggcagGATGGACACATCTAGAGACCATTGACTCACTGATG
EST: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAG GATGGACACATCTAGAGACCATTGACTCACTGATGAGGAAGGCAGGTTACAEST: gi|33814577|gb|CF333153.1|CF333153
genomic: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAGgtgaaaactt ... tacctggcagGATGGACACATCTAGAGACCATTGACTCACTGATGAGGAAGGCAGGTTACA
EST: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAG GATGGACACATCTAGAGACCATTGACTCACTGATGAGGAAGGCAGGTTACAEST: gi|66931214|gb|CX118062.1|CX118062
genomic: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAGgtgaaaactt ... tacctggcagGATGGACACATCTAGAGACCATTGACTCACTGATGAGGAAGGCAGGTTACA
EST: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAG GATGGACACATCTAGAGACCATTGACTCACTGATGAEST: gi|58602145|gb|CK012673.1|CK012673
genomic: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAGgtgaaaactt ... tacctggcagGATGGACACATCTAGAGACCATTGACTCACTGATGA
EST: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAG GATGGACACATCTAGAGACCATTGACTCACTGATGAGGAAGGCAGGTTACAEST: gi|33812402|gb|CF332089.1|CF332089
genomic: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAGgtgaaaactt ... tacctggcagGATGGACACATCTAGAGACCATTGACTCACTGATGAGGAAGGCAGGTTACA
EST: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAG GATGGACACATCTAGAGACCATTGACTCACTGATGEST: gi|33680239|gb|CF308478.1|CF308478
genomic: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAGgtgaaaactt ... tacctggcagGATGGACACATCTAGAGACCATTGACTCACTGATG
EST: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAG GATGGACACATCTAGAGACCATTGACTCACTGATGAGGAAGGCAGGTTACA
genomic: TAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAGgtgaaaactt ... tacctggcagGATGGACACATCTAGAGACCATTGACTCACTGATGAGGAAGGCAGGTTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGTAAGCATGGGTTAATTATTGAATTCACTGATCCAGACTATAACATGAGGCGCAGTGCAACTTATTTACCTGAGGTTGCTGCCCATGAAGgtgaaaacttacttgcatctatatattgctgctgaatgctgcattttcaccttctacacatgttgtcactaagttattagttattgcaactaccacaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC