1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactcttaatgcatgttccgagtgtgtatgtacgtcaacaaaggagaattctatgcttgcaaaactttgacatattatattcacttctgaatagcac...
species | Oryza sativa |
transcript | LOC_Os10g41710.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAG GTTCTCTTCTCTGACATAAATGCTTATGAGEST: gi|89171890|gb|CI040400.1|CI040400
genomic: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactctt ... gactttgcagGTTCTCTTCTCTGACATAAATGCTTATGAG
EST: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAG GTTCTCTTCTCTGACATAAATGCTTATGAGEST: gi|13165574|gb|AU174371.1|AU174371
genomic: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactctt ... gactttgcagGTTCTCTTCTCTGACATAAATGCTTATGAG
EST: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAG GTTCTCTTCTCTGACATAAATGCTTATGAGEST: gi|86415751|gb|CI029762.1|CI029762
genomic: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactctt ... gactttgcagGTTCTCTTCTCTGACATAAATGCTTATGAG
EST: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAG GTTCTCTTCTCTGACATAAATGCTTATGAGEST: gi|86531799|gb|CI172005.1|CI172005
genomic: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactctt ... gactttgcagGTTCTCTTCTCTGACATAAATGCTTATGAG
EST: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAG GTTCTCTTCTCTGACATAAATGCTTATGAGEST: gi|86846350|gb|CI280735.1|CI280735
genomic: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactctt ... gactttgcagGTTCTCTTCTCTGACATAAATGCTTATGAG
EST: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAG GTTCTCTTCTCTGACATAAATGCTTATGAGEST: gi|89168879|gb|CI020960.1|CI020960
genomic: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactctt ... gactttgcagGTTCTCTTCTCTGACATAAATGCTTATGAG
EST: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAG GTTCTCTTCTCTGACATAAATGCTTATGAGEST: gi|86415935|gb|CI029946.1|CI029946
genomic: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactctt ... gactttgcagGTTCTCTTCTCTGACATAAATGCTTATGAG
EST: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAG GTTCTCTTCTCTGACATAAATGCTTATGAGEST: gi|15009090|gb|AU223478.1|AU223478
genomic: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactctt ... gactttgcagGTTCTCTTCTCTGACATAAATGCTTATGAG
EST: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAG GTTCTCTTCTCTGACATAAATGCTTATGAGEST: gi|4969316|gb|AU066220.1|AU066220
genomic: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactctt ... gactttgcagGTTCTCTTCTCTGACATAAATGCTTATGAG
EST: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAG GTTCTCTTCTCTGACATAAATGCTTATEST: gi|86532547|gb|CI172753.1|CI172753
genomic: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactctt ... gactttgcagGTTCTCTTCTCTGACATAAATGCTTAT
EST: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAG GTTCTCTTCTCTGACATAAATGCTTATGAG
genomic: ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactctt ... gactttgcagGTTCTCTTCTCTGACATAAATGCTTATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTGTCTGTTGGTGCTGATGTTAATGAAGTTGAAGCTGGAAAGAAGgtaaactcttaatgcatgttccgagtgtgtatgtacgtcaacaaaggagaattctatgcttgcaaaactttgacatattatattcacttctgaatagcac
- - - - - - - GCTGAT
- - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - AAGAAG