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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTCAACCGCAAAGGCCCCTCCGGCTTCTCCGGCGCCTCCACCGCCGAGGAGGTCACCGCCGGCGTCGACGCTCGGGGCTTGGTCGCCGTCATCACAGgtacggatatgatttttttttgaacgactcgcgcaaagatggtgcgaagttctattatcacaggcaggggcggagctagaacaaaatgaaaggggttcca...

Basic information

species Oryza sativa
transcript LOC_Os10g40020.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g40020.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G464885_T02 (Zea mays), 5'ss of exon 1
TGGTTCAACCGCAAAGGCCCCTCCGGCTTCTCCGGCGCCTCCACCGCCGAGGAGGTCACCGCCGGCGTCGACGCTCGGGGCTTGGTCGCCGTCATCACAGgtac----ggatatgatttttttttgaacgactcg--cgcaaagatggtgcgaagttctattatcacagg-caggggcggagctagaacaaaatgaaaggggttcca
|||||| ||||||||||| | || ||||||||| |||||||||| || ||||| |||||||||||||||||||  |  ||  ||||||||||||||||||||||      | | | || | |  | | | | |      | |    |   |  || |     |  | |   |   | || |  |  |    |||||  |        
TGGTTCTACCGCAAAGGCTCATCGGGCTTCTCCAGCGCCTCCACGGCTGAGGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAGgtacttaaaaacacgcttctatgctaatccatttagcttccaccccgcctctgagcttggcgacaaaacatccaagacgtatttcaacgggaatgactgc-------

upper sequence: LOC_Os10g40020.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G128577_T01 (Zea mays), 5'ss of exon 1
TGGTTCAACCGCAAAGGCCCCTCCGGCTTCTCCGGCGCCTCCACCGCCGAGGAGGTCACCGCCGGCGTCGACGCTCGGGGCTTGGTCGCCGTCATCACAGgtacggata--tgatttttttttgaacgactcgcgcaaagatggtgcgaagttctattatcacaggcaggggcggagctagaacaaaatgaaaggggttcca--
|||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||  |      ||||||||||||||||||||||  |||  |   |    |   | |   |||| |  |  || | |  ||    |  ||| || |   || |||   | |    | ||||  |  |  |||  
TGGTTCTACCGCAAAGGACCCTCCGGCTTCTCTGGCGCCTCCACGGCCGAGGAGGTCACCGCCGGCGTCGACGGCCACCTTCTGGTCGCCGTCATCACAGgtacatatacttacctcgcatcccagctggtcgctcgta--tgat-cacagccggaccatcccacg-gcggtcgggctttgtgatatatgagcgacgcgccacc