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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATGGTTCAGGCTCAAGTTCCCTCACTTGACATGTGGAAGCCTTGCGAGCTCAGGGGTGGTGCTTGCTGTGTACAATTTCACTGACTTTGACAAGCAGgttaggaattatgatttaggagtacagtttcaccagtgctatggacaaggatcatggtgagtcatgaactcatgatccttgtatccatgctgctgttctgtgtaatccactttggatctgatgaaattttttgtatggctaccattgtgtag

Basic information

species Oryza sativa
transcript LOC_Os10g36780.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36780.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G082502_T02 (Zea mays), 5'ss of exon 3
TGCATGGTTCAGGCTCAAGTTCCCTCACTTGACATGTGGAAGCCTTGCGAGCTCAGGGGTGGTGCTTGCTGTGTACAATTTCACTGACTTTGACAAGCAGgttaggaattatgatttaggagtacagtttcaccagtgctatggacaaggatcatggtgagtcatgaactcatgatccttgtatccatgc-tgctgttctgtgtaatccactttggatctgatgaaattttttgtatggctaccattgtgtag
 || |||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||| ||||| |||||||| | ||| ||||||||||||||||||   | |     |   ||  ||  ||     | | || |  ||      ||    |||   |      |   || |  || |||||   ||     || | | ||  |                                           
CGCCTGGTTCAGGCTCAAGTTCCCCCATTTGACATGTGGGAGCCTCGCGAGCTCAGGGGTGGTTCTTGCAGTGTACAACTACACCGACTTTGACAAGCAGgttgatagtc-cactccgggcata-ggtggagacggcgcaaatgaattctgtctgtttgatgtacttctacccaattcaggtctccatatgtgacagcctttattatgtag------------------------------------------

upper sequence: LOC_Os10g36780.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT4G36190.1 (Arabidopsis thaliana), 5'ss of exon 4
TGCATGGTTCAGGCTCAAGTTCCCTCACTTGACATGTGGAAGCCTTGCGAGCTCAGGGGTGGTGCTTGCTGTGTACAATTTCACTGACTTTGACAAGCAGgttaggaattatgatttaggagtacagtttcaccagtgctatgg------acaaggatcatggtgagtcatgaactcatgatccttgtatccatgctgctgttctgtgtaatccactttggatctgatgaaattttttgtatggctaccattgtgtag
||| |||||| |||| ||||||||||| ||||| ||||||||||| || || ||||  || || | |||||| ||| | ||| | || |||||  | ||||| |    |||  || |   | |  |  |  |  | || | ||       | |  ||   | ||   | |   | ||  |||  || || |     |  ||    |                                                    
TGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGTGGAAGCCTCGCTAGTTCAGCAGTTGTTCGTGCTGTCTACGAATTCCCCGAATTTGATCAACAGgt-attcgttacaatattcaactttaagtgaagaaatgttgtgtttcttcatatagagtttagttgctgacagaatcgagatttttatacc----ttattgaatag----------------------------------------------------

upper sequence: LOC_Os10g36780.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT4G36195.3 (Arabidopsis thaliana), 5'ss of exon 5
TGCATGGTTCAGGCTCAAGTTCCCTCACTTGACATGTGGAAGCCTTGCGAGCTCAGGGGTGGTGCTTGCTGTGTACAATTTCACTGACTTTGACAAGCAGgttaggaattatgatttaggagtacagtttcaccagtgctatggacaaggatcatggtgagtcatgaactcatgatccttgtatccatgctgctgttctgtgtaatccactttggatctgatgaaattttttgtatggctaccattgtgtag
||| |||||| |||| ||||||||||| ||||| |||||||||||||| || || |  || || | ||| || ||| | ||| |||| |||||  | |||||     ||| || || | || || | ||| |     |  ||||    |  || |  |      |  | |  || |    | ||| |   |  ||| |  | |     |                                           
TGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGTGGAAGCCTTGCTAGTTCTGCAGTTGTTCGTGCAGTCTACGAATTCCCTGAATTTGATCAACAGgt-----att-tgtttcaagattaaactttaaatgaagacatgg-tgtgtttcttcatatagagtttagt--tgctgacagaatcgaaatttttgtgccttattgagtag------------------------------------------