1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCATCTGGCAAAAGCCTAAGAACCACCTTGAATGTGCCAACATCAAGAAGAAGTATAAGACACCCCATATATGCAAGAGTGACAATCCTGATGCTGCCTGgtatggaatcgctgcaccaacaagactatctgataattcatttagatgtctgccactgaattagtttcttttaccccttcatgtgaacag
species | Oryza sativa |
transcript | LOC_Os10g36690.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGTATAAGACGCCCCATATATGCAAGAGTGACAATCCTGATGCTGCCTG GTACAAGCAGATGGAAGCATGTGTTACTCCATTGCCTGAAGTAAGCAACCAEST: gi|163917936|gb|EG715236.1|EG715236
genomic: AAGTATAAGACACCCCATATATGCAAGAGTGACAATCCTGATGCTGCCTGgtatggaatc ... atgtgaacagGTACAAGCAGATGGAAGCATGTGTTACTCCATTGCCTGAAGTAAGCAACCA
EST: AAGTATAAGACACCCCATATATGCAAGAGTGACAATCCTGATGCTGCCTG GTACAAGCAGATGGAAGCATGTGTTACTCCATTGCCTGAAGTAAGCAACCAEST: gi|4880936|gb|AU065235.1|AU065235
genomic: AAGTATAAGACACCCCATATATGCAAGAGTGACAATCCTGATGCTGCCTGgtatggaatc ... atgtgaacagGTACAAGCAGATGGAAGCATGTGTTACTCCATTGCCTGAAGTAAGCAACCA
EST: AGTATAAGACACCCCATATATGCAAGAGTGACAATCCTGGATGCTGCCTG GTACAAGCAGATGGAAGCATGTGTTACTCCATTGCCTGAAGTAAGCAACCAEST: gi|58601521|gb|CK012049.1|CK012049
genomic: AGTATAAGACACCCCATATATGCAAGAGTGACAATCCTG-ATGCTGCCTGgtatggaatc ... atgtgaacagGTACAAGCAGATGGAAGCATGTGTTACTCCATTGCCTGAAGTAAGCAACCA
EST: AAGTATAAGACACCCCATATATGCAAGAGTGACAATCCTGATGCTGCCTG GTACAAGCAGATGGAAGCATGTGTTACTCCATTGCCTGAAGTAAGCAACCAEST: gi|4968753|gb|AU065657.1|AU065657
genomic: AAGTATAAGACACCCCATATATGCAAGAGTGACAATCCTGATGCTGCCTGgtatggaatc ... atgtgaacagGTACAAGCAGATGGAAGCATGTGTTACTCCATTGCCTGAAGTAAGCAACCA
EST: AAGTATAAGACACCCCATATATGCAAGAGTGACAATCCTGATGCTGCCTG GTACAAGCAGATGGAAGCATGTGTTACTCCATTGCCTGAAGTAAGCAACCA
genomic: AAGTATAAGACACCCCATATATGCAAGAGTGACAATCCTGATGCTGCCTGgtatggaatc ... atgtgaacagGTACAAGCAGATGGAAGCATGTGTTACTCCATTGCCTGAAGTAAGCAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCTGGCAAAAGCCTAAGAACCACCTTGAATGTGCCAACATCAAGAAGAAGTATAAGACACCCCATATATGCAAGAGTGACAATCCTGATGCTGCCTGgtatggaatcgctgcaccaacaagactatctgataattcatttagatgtctgccactgaattagtttcttttaccccttcatgtgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC