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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAGgtgacaccgggatcccctctctggtttgtttgtgatgctatgtccatttgcattgatattattaccctgatcag

Basic information

species Oryza sativa
transcript LOC_Os10g35644.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g35644.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G822098_T05 (Zea mays), 5'ss of exon 4
GTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAGgtgacaccg------ggatcccctctctggtttgttt---gtgatgctatgtccatttgc---------attgatattattaccctgatcag-----
||||||||| || |||||||||||||| | ||||||||||||||| || |||||||| ||   |      ||| | ||||| ||    ||||   ||  |||| | ||| ||| |         | ||      |   || ||||       
GTGGGCTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttgaccaccggaactcctctgtgtcacgtttcttgtcctgctgtttccctttccctgaactgaactggagccgtcgtcccgatctctgcag

upper sequence: LOC_Os10g35644.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G822098_T03 (Zea mays), 5'ss of exon 4
---------------------------------------------GTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAGgtgacaccg------ggatcccctctctggtttgttt---gtgatgctatgtccatttgc---------attgatattattaccctgatcag-----
                                             ||||||||| || |||||||||||||| | ||||||||||||||| || |||||||| ||   |      ||| | ||||| ||    ||||   ||  |||| | ||| ||| |         | ||      |   || ||||       
AGTTCTTGCTGCTTCTGATCTACTACTGTATGAGCTTGTTTTCAGGTGGGCTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttgaccaccggaactcctctgtgtcacgtttcttgtcctgctgtttccctttccctgaactgaactggagccgtcgtcccgatctctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29689642|gb|CB685917.1|CB685917
EST:     CTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAG                         TGCCATTGTCATTCCTGTAGGAAGTAGGTCTCCCAAGCCATGTTGCTACAT
genomic: CTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAGgtgacaccgg ... ccctgatcagTGCCATTGTCATTCCTGTAGGAAGTAGGTCTCCCAAGCCATGTTGCTACAT