1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AATCGGTTGATAAAACATTTGAAGAGTAATGGAGTACCAGCTGCTTTGGCTTCCAACTCACCAAGATCAAACATTGACGCAAAAATTTCCTGCCATCAAGgtaaccctctcatactttagggtaaaattttttcctgaatttgcatgctattttctttgattttgtggacagatatatcatatattaattactgtattctcaccatgtttag
species | Oryza sativa |
transcript | LOC_Os10g32730.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATC-AACATTGACGC-AAAATTTCCTGCCATCAAG GATGGAAAGAGTCGTTCTCCGCAATTGTTGGTGGTGATGAAGTAGAGAAGGEST: gi|58654300|gb|CK042980.1|CK042980
genomic: AGATCAAACATTGACGCAAAAATTTCCTGCCATCAAGgtaaccctct ... ccatgtttagGATGGAAAGAGTCGTTCTCCGCAATTGTTGGTGGTGATGAAGTAGAGAAGG
EST: TTCCAACTCACCAAGATCAAACATTGACGCAAAAATTTCCTGCCATCAAG GATGGAAAGAGTCGTTCTCCGCAATTGTTGGTGGTGATGAAGTAGAGAAGGEST: gi|29671819|gb|CB668094.1|CB668094
genomic: TTCCAACTCACCAAGATCAAACATTGACGCAAAAATTTCCTGCCATCAAGgtaaccctct ... ccatgtttagGATGGAAAGAGTCGTTCTCCGCAATTGTTGGTGGTGATGAAGTAGAGAAGG
EST: TTCCAACTCACCAAGATCAAACATTGACGCAAAAATTTCCTGCCATCAAG GATGGAAAGAGTCGTTCTCCGCAATTGTTGGTGGTGATGAAGTAGAGAAGGEST: gi|29629324|gb|CB634335.1|CB634335
genomic: TTCCAACTCACCAAGATCAAACATTGACGCAAAAATTTCCTGCCATCAAGgtaaccctct ... ccatgtttagGATGGAAAGAGTCGTTCTCCGCAATTGTTGGTGGTGATGAAGTAGAGAAGG
EST: TTCCAACTCACCAAGATCAAACATTGACGCAAAAATTTCCTGCCATCAAG GATGGAAAGAGTCGTTCTCCGCAATTGTTGGTGGTGATGAAGTAGAGAAGGEST: gi|29623338|gb|CB628349.1|CB628349
genomic: TTCCAACTCACCAAGATCAAACATTGACGCAAAAATTTCCTGCCATCAAGgtaaccctct ... ccatgtttagGATGGAAAGAGTCGTTCTCCGCAATTGTTGGTGGTGATGAAGTAGAGAAGG
EST: TTCCAACTCACCAAGATCAAACATTGACGCAAAAATTTCCTGCCATCAAG GATGGAAAGAGTCGTTCTCCGCAATTGTTGGTGGTGATGAAGTAGAGAAGG
genomic: TTCCAACTCACCAAGATCAAACATTGACGCAAAAATTTCCTGCCATCAAGgtaaccctct ... ccatgtttagGATGGAAAGAGTCGTTCTCCGCAATTGTTGGTGGTGATGAAGTAGAGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCGGTTGATAAAACATTTGAAGAGTAATGGAGTACCAGCTGCTTTGGCTTCCAACTCACCAAGATCAAACATTGACGCAAAAATTTCCTGCCATCAAGgtaaccctctcatactttagggtaaaattttttcctgaatttgcatgctattttctttgattttgtggacagatatatcatatattaattactgtattctcaccatgtttag
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