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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAACCTGTAATAAAAAGTGCAGAGCTGATTCTGAAACTATACTTGGCTTTTTTTGGACAGACTGCCCCACTTGTGATGTCATAATAATAAAAACAAGgtactacctctgttattttttacttggtgcttagggcatcgacacagtctccagttgtacatgtttgatccttactttttctaatcatatatcttgtaaa...

Basic information

species Oryza sativa
transcript LOC_Os10g26140.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g26140.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G444692_T02 (Zea mays), 5'ss of exon 4
GACAAACCTGTAATAAAAAGTGCAGAGCTGATTCTGAAACTATACTTGGCTTTTTTTGGACAGACTGCCCCACTTGTGATGTCATAATAATAAAAACAAGgtactacctctgttattttttac--ttggtgcttagggcatcgacacagtctccagttgtacatgtttgatccttactttttctaatcatatatcttgtaaa---
|  | || ||||  |||||||||||||||||||| |||||| ||||||||||||| |||||||| ||||| || |||||||| ||| |  |||||||||||||     | ||  | || ||||  ||    |||  || |  || |  ||||  | ||   |   ||      |       | |||  |||     | ||     
GGGAGACTTGTAGCAAAAAGTGCAGAGCTGATTCAGAAACTGTACTTGGCTTTTTCTGGACAGATTGCCCAACATGTGATGTTATACTTGTAAAAACAAGgta-----tgtgcaacttgttacagttacaactttaggaacagaaattgtctaaaattaatcccattgacatatagaaggatgtaactataagctgtttatcagt