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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATGATTCATGTTCCCTCCATCAGATTGGCAGTGTCCGGATGGCTCTTCTCCGATCACCAGACgtaagagttaagaacagccacagcgttctccgtcccattgcacttatttaagattctaactttgatgttactatcttgggttcttgaattgtcag

Basic information

species Oryza sativa
transcript LOC_Os10g21890.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29622297|gb|CB627308.1|CB627308
EST:     CCCTCCATCAGATTGGCAGTGTCCGGATGGCTCTTCTCCGATCACCAGAC                         TGGGCGCAAGGGTCCCGGGAGCTGTCCTGGATGCCACAAT
genomic: CCCTCCATCAGATTGGCAGTGTCCGGATGGCTCTTCTCCGATCACCAGACgtaagagtta ... gaattgtcagTGGGCACAAGGGTCCCGGGAGCTGTCCTGGATGCCACAAT
EST: gi|29622320|gb|CB627331.1|CB627331
EST:     CCCTCCATCAGATTGGCAGTGTCCGGATGGCTCTTCTCCGATCACCAGAC                         TGGGCGCAAGGGTCCCGGGAGCTGTCCTGGATGCCACAAT
genomic: CCCTCCATCAGATTGGCAGTGTCCGGATGGCTCTTCTCCGATCACCAGACgtaagagtta ... gaattgtcagTGGGCACAAGGGTCCCGGGAGCTGTCCTGGATGCCACAAT