1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTACAACTCCATTGGAGCATATGGGCAGTCAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattgctcttctcttagatcatgtcgccagttatagatatattttttttggtgcaacgctgtatttggagttatttcaattgagatatgtttatt...
species | Oryza sativa |
transcript | LOC_Os09g39670.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAG GATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATCEST: gi|88972231|gb|CI018674.1|CI018674
genomic: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattg ... ggtttaacagGATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATC
EST: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAG GATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATCEST: gi|88977035|gb|CI024772.1|CI024772
genomic: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattg ... ggtttaacagGATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATC
EST: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAG GATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATCEST: gi|88206151|gb|CI206000.1|CI206000
genomic: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattg ... ggtttaacagGATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATC
EST: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAG GATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATCEST: gi|58677683|gb|CK066370.1|CK066370
genomic: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattg ... ggtttaacagGATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATC
EST: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAG GATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATCEST: gi|5003515|gb|AU068664.1|AU068664
genomic: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattg ... ggtttaacagGATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATC
EST: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAG GATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATCEST: gi|5002903|gb|AU068012.1|AU068012
genomic: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattg ... ggtttaacagGATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATC
EST: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAG GATGAGGGTGTCAACATAACTGNAAATTCTCTTCATCCTGGATCTATCATC
genomic: CAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattg ... ggtttaacagGATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAACTCCATTGGAGCATATGGGCAGTCAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGgtgcgcattgctcttctcttagatcatgtcgccagttatagatatattttttttggtgcaacgctgtatttggagttatttcaattgagatatgtttatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT