1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTAAGTTCTCCATATGTAGCATCTGTTGCACCTGGAAGCATCCCAACAAGCTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctgattttcctttcaacttatgacccttctatataagcaaattgagactctagatttttattatttgtgatggcaatttctgtagaggaaatt...
species | Oryza sativa |
transcript | LOC_Os09g38790.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|25797175|gb|CA753136.1|CA753136
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|29655595|gb|CB651870.1|CB651870
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCACTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGATGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|86431384|gb|CI084995.1|CI084995
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTTTAATAATAAAGCACEST: gi|86493697|gb|CI136330.1|CI136330
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGC-CEST: gi|38475380|gb|CF959513.1|CF959513
genomic: CTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATACGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAAGAATAAAGCACEST: gi|88436645|gb|CI691377.1|CI691377
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGCTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|89193768|gb|CI116401.1|CI116401
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|86504973|gb|CI147606.1|CI147606
genomic: CAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|88584106|gb|CI701634.1|CI701634
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTCCTAATAATAAAGCACEST: gi|88588125|gb|CI705920.1|CI705920
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|88584300|gb|CI701845.1|CI701845
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|95101217|gb|CI692956.1|CI692956
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|95100848|gb|CI692566.1|CI692566
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|33681611|gb|CF309850.1|CF309850
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|86538469|gb|CI178675.1|CI178675
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCACEST: gi|88590829|gb|CI707721.1|CI707721
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
EST: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAG GTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
genomic: CTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctg ... tctgttccagGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAATAATAAAGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGTTCTCCATATGTAGCATCTGTTGCACCTGGAAGCATCCCAACAAGCTCTCCATCAGTTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaagagctgattttcctttcaacttatgacccttctatataagcaaattgagactctagatttttattatttgtgatggcaatttctgtagaggaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT